07-30-2019
1. Could you please show what you have tried?
2. Please understand that forum members may not have working knowledge of biology. So when you say, "Print out the number of occurrences for each motif that is found in the bacterial genome", this makes no sense to me (and may not to a lot others too)
3. A good post requesting assistance should in my humble opinion have the following information:
- Clearly state the problem without any ambiguity. Break down your problem into the smallest part where you need help. Posting a question 100 lines long will yield no result. People will yawn and go back to doing their day job.
- Show your attempt at solving the problem. This will help members focus on the exact place where you need help; and not have to dig about and assume where you might be facing the issue.
- One line about your OS, your shell, preferred scripting language..
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a very basic bash shell script, which has many "while... done; for .... done" loop clauses, like the following
~~
#!/bin/bash
while blablalba; do
....
done < /tmp/file
for line in `cat blablabla`; do grep $line /tmp/raw ; done > /tmp/1;
while blablalba2; do
....
done <... (2 Replies)
Discussion started by: fedora
2 Replies
2. Shell Programming and Scripting
SEND_MESSAGE=test
echo $SEND_MESSAGE
if
then
echo `date` > update_dt_ccaps.lst
echo "The file transfer failed" >> update_dt_ccaps.lst
SEND_MESSAGE=false
fi
The above code is showing error in bash shell as :
./test: line 5: [: test: integer expression expected
... (2 Replies)
Discussion started by: DILEEP410
2 Replies
3. Shell Programming and Scripting
I'm trying to search all .odt files in a directory for a string in the text of the file.
I've found a bash script that works, except that it can't handle whitespace in the filenames.
#!/bin/bash
if ; then
echo "Usage: searchodt searchterm"
exit 1
fi
for file in $(ls *.odt); do
... (4 Replies)
Discussion started by: triplemaya
4 Replies
4. Shell Programming and Scripting
Hi,
I am working on bash script after a long time. I am getting error near done statement while running a for loop snippet. The error says "Syntax error near unexpcted token 'done'"
please suggest what could be wrong. here is the snippet
elements=${#option_arr} //an array of values... (1 Reply)
Discussion started by: arundhati_s
1 Replies
5. Shell Programming and Scripting
Having issues with an expect script. I've been scripting bash, python, etc... for a couple years now, but just started to try and use Expect. Trying to create a script that takes in some arguments, and then for now, just runs a pwd command(for testing, final will be command I pass).
Here is... (0 Replies)
Discussion started by: cbo0485
0 Replies
6. Shell Programming and Scripting
Hi Folks,
I have a loop that goes through an array and the output is funky.
sample:
array=( 19.239.211.30 )
for i in "${array}"
do
echo $i
iperf -c $i -P 10 -x CSV -f b -t 50 | awk 'END{print '$i',$6}' >> $file
done
Output:
19.239.211.30
19.2390.2110.3 8746886
seems that when... (2 Replies)
Discussion started by: nitrohuffer2001
2 Replies
7. Shell Programming and Scripting
I have the following while loop that I put in a script, demo.sh:
while read rna; do
aawork=$(echo "${rna}" | sed -n -e 's/\(...\)\1 /gp' | sed -f rna.sed)
echo "$aawork" | sed 's/ //g'
echo "$aawork" | tr ' ' '\012' | sort | sed '/^$/d' | uniq -c | sed 's/*\(*\) \(.*\)/\2: \... (3 Replies)
Discussion started by: faizlo
3 Replies
8. Shell Programming and Scripting
Hi Everybody,
I'm a newbie to shell scripting, and I'd appreciate some help. I have a bunch of .txt files that have some unwanted content. I want to remove lines 1-3 and 1028-1098.
#!/bin/bash
for '*.txt' in <path to folder>
do
sed '1,3 d' "$f";
sed '1028,1098 d' "$f";
done
I... (2 Replies)
Discussion started by: BabyNuke
2 Replies
9. Shell Programming and Scripting
Dear all,
Please help with the following.
I have a file, let's call it data.txt, that has 3 columns and approx 700,000 lines, and looks like this:
rs1234 A C
rs1236 T G
rs2345 G T
Please use code tags as required by forum rules!
I have a second file, called reference.txt,... (1 Reply)
Discussion started by: aberg
1 Replies
10. UNIX for Beginners Questions & Answers
Hi everyone
I need some help
I want to create an script which does some processing
it takes the two arguments 201901010000 and 201901020200 - so YYYMMDDHHMM
I want to split processing into hours from start until end,
I dont get why this works but when I add to a future variable... (1 Reply)
Discussion started by: kl1ngac1k
1 Replies
LEARN ABOUT SUSE
gst-complete
gst-complete-0.8(1) User Commands gst-complete-0.8(1)
NAME
gst-complete-0.8, gst-complete - perform bash completion for gst-launch command lines
SYNOPSIS
complete -Cgst-complete-0.8 gst-launch
gst-complete [--gst-list-mm] [--gst-mm=string] [--print]
DESCRIPTION
gst-complete-0.8 enables bash to provide context-sensitive tab completion for gst-launch command lines. See gst-launch(1) for the syntax of
gst-launch command lines.
You must have a version of bash that supports programmable completion. Such versions of bash provide the complete built-in command.
gst-complete is a wrapper script that runs the latest installed version of gst-complete-X.X. For example, if both gst-complete-0.7 and gst-
complete-0.8 are installed on your system, gst-complete runs gst-complete-0.8.
OPTIONS
The following options are supported by gst-complete-0.8 and gst-complete:
--help Display detailed usage message. You can also use -? to specify this option.
The following options are supported by gst-complete only:
--gst-list-mm List found major/minor versions. This option displays the versions that are available.
--gst-mm=string Force major/minor version. This option enables you to specify a specific version to run, if you do not want to run the
default version.
--print Print wrapped command line. This option displays the command that will be run, and then runs the command.
EXAMPLES
Example 1: Generating the Registry of Available Plugins by Running gst-compprep
Run the following command in your .bash_profile or other appropriate place:
example% complete -C gst-complete-0.8 gst-launch
Example 2: Running the Wrapper Script and Displaying the Command Name
example% gst-complete --print
/usr/bin/gst-complete-0.8
FILES
The following files are used by this application:
/usr/bin/gst-complete-0.Executable for bash completion for gst-launch
/usr/bin/gst-complete Wrapper script that runs the latest installed version of gst-complete-X.X
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+-----------------------------+-----------------------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+-----------------------------+-----------------------------+
|Availability |SUNWgnome-media |
+-----------------------------+-----------------------------+
|Interface stability |External |
+-----------------------------+-----------------------------+
SEE ALSO
gst-compprep(1), gst-feedback(1), gst-inspect(1), gst-launch(1), gst-launch-ext(1), gst-md5sum(1), gst-register(1), gst-thumbnail(1), gst-
typefind(1), gst-xmlinspect(1), gst-xmllaunch(1), gstreamer-properties(1), libgstreamer-0.8(3), libgstgetbits(3)
NOTES
Original man page written by the GStreamer team at http://gstreamer.net/.
Updated by Brian Cameron, Sun Microsystems Inc., 2004.
SunOS 5.10 14 Oct 2004 gst-complete-0.8(1)