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Full Discussion: Help with a bash loop script
Top Forums UNIX for Beginners Questions & Answers Help with a bash loop script Post 303037352 by bakunin on Tuesday 30th of July 2019 10:12:21 AM
Old 07-30-2019
Here we go again analysing FASTA-files. I wonder if we are going to be mentioned in the dozens of biological research papers we have helped to create over time.

Quote:
Originally Posted by dre
Create a single bash script that does the following:
Sorry, but this is not the way that works.

First: you come across like a teacher posing the homework for us. Actually we are all professionals here and have done our homework meticulously which is why we don't have to do more homework any more. In case it was homework given to you by your teacher: there is a special forum for this with special rules in place. Please re-create the thread there and provide the necessary information.

Second, in case this is not homework but actually your work: we do not insist on a lot of social conventions here (after all, we are sysadmins - being somewhat autistic is part of the requirement for this job), but still a well-placed "please" here and there, along with some of the common niceties called "good manners" oils the social machinery. If you ever wonder who writes the answers to your questions: it is not some clever machine and a fat server - it is actually living, breathing persons.

Third and foremost: we are here to help you help yourself. If you want a shell-script - WRITE IT! Attempts, however failing, will count. If you tried and it didn't work, post what you did and the error you got trying to run it. We will, regardless of how long it will take, explain to you what was wrong and how to do it better (actually quite like the way i explain to you right now why you need to change your problem statement) until you understand. We will also point out ways to better solve the problem, different tools, suggest sources to find valuable information and so on and so on. But we will NOT write your code for you. We are a help forum, not your unpaid programming staff.

I hope this helps.

bakunin
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LEARN ABOUT DEBIAN

xsil2graphics

XSIL2GRAPHICS(1)					User Contributed Perl Documentation					  XSIL2GRAPHICS(1)

NAME

       xsil2graphics - generate scripts to load xsil output data files

SYNOPSIS

       xsil2graphics [options] <xsil_file>

DESCRIPTION

       Utility program bundled with xmds, used to generate scripts that load simulation output data into either matlab (http://www.mathworks.com)
       or scilab (http://www.scilab.org), which are then used to manipulate the results further if necessary and then to present the results
       graphically.

       Matlab

       To generate a matlab m-file, from the xsil file data_file.xsil use the command:

       bash$ xsil2graphics data_file.xsil

       or

       bash$ xsil2graphics --matlab data_file.xsil

       Then at the matlab command prompt:

       >> data_file

       Scilab

       To generate a scilab script file, from the xsil file data_file.xsil use the command:

       bash$ xsil2graphics --scilab data_file.xsil

       Then at the scilab command prompt:

       --> exec('data_file.sci')

OPTIONS

       -m, --matlab generate matlab m-file script to load data from the xsil data file (the default option)

       -s, -scilab generate scilab script file to load data from the xsil data file

       -o, --outfile <out_file> specify an alternative output script filename to the default which is the input xsil filename with the .xsil
       extension changed to either .m for the matlab m-file or .sci for the scilab script file

EXAMPLES

       bash$ xsil2graphics nlse.xsil

       Generates the output nlse.m to load the data into matlab

       bash$ xsil2graphics -m nlse.xsil

       Also generates the output nlse.m but explicitly sets matlab to be the output format

       bash$ xsil2graphics --scilab nlse.xsil

       Generates the output nlse.sci to load the data into scilab

       bash$ xsil2graphics --outfile nlse_new.m nlse.xsil

       Generates the output nlse_new.m to load the data into matlab

AUTHORS

       Originally written by Greg Collecutt

       Maintained by Paul Cochrane with code contributed by Joe Hope

BUGS

       No known bugs.

SEE ALSO

       xmds(1), loadxsil(1)

       http://www.xmds.org

COPYRIGHT

       Copyright (C) 2000-2004

       Code contributed by Greg Collecutt, Joseph Hope and Paul Cochrane

       This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
       the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
       CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
       Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.

perl v5.8.2							    2004-06-21							  XSIL2GRAPHICS(1)
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