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Top Forums Shell Programming and Scripting Bash variable expansion in awk script Post 303036303 by vgersh99 on Friday 21st of June 2019 06:21:32 PM
Old 06-21-2019
Code:
MY_DIR="/storage/tmp"
awk -v myDir="${MY_DIR}" '{if ($1 == "aaa")  out=(myDir "/group_a.gtf"); else if ($7 == "bbb") out=(myDir "/group_b.gtf"); print >> out;close(out)} ' infile

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Bio::FeatureIO::gtf(3pm)				User Contributed Perl Documentation				  Bio::FeatureIO::gtf(3pm)

NAME
Bio::FeatureIO::gtf - read write features in GTF format SYNOPSIS
Bio::FeatureIO::gff DESCRIPTION
GTF, is also known as GFF v2.5. This class is simply a subclass of Bio::FeatureIO::gff that initializes with -version => 2.5. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR - Allen Day Email allenday@ucla.edu APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ perl v5.14.2 2012-03-02 Bio::FeatureIO::gtf(3pm)
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