How can I pass in an argument such as "*.k" to a bash script
without having to double-quote *.k and not having *.k
`glob` to match all files in the pattern?
I tried using noglob in my script but this didn't work the way I thought
it would.. expansion is still occuring, $# is higher than I... (3 Replies)
Hello -
I have a bash script which does some logging, and I'd like to include the line number of the echo statement that pipes into $LOGGER:
MYPID=$$
MYNAME=`basename $0`
LOGGER="/usr/bin/logger -t $MYNAME($LINENO) -p daemon.error"
...
echo 'this is an entry into the log file' | $LOGGER
... (3 Replies)
i write a batch file , here is the content.
dirname='date +%Y-%m-%d'
mkdir dirname
but it doen's work, it just create a folder named date and +%Y-%m-%d.
i have tried run the command seperately in the bash prompt. after the first
sentence executed , i use $dirname to watch the value of... (4 Replies)
This is what I have in my directory.
$ ls
test1.txt test2.txt test3.txt test4.txt test5.txt test_script.sh
This is what my shellscript looks like.
#!/bin/bash
for filename in /shell_expansion/*.txt; do
for ((i=0; i<=3; i++)); do
echo "$filename"
... (5 Replies)
I want to split one file input.tab into two separate ones, odd lines to input_reads1.txt, even lines to input_reads2.txt for a serial of files with similar name pattern. Also I want to "match" input/output file names to keep consistency of file name:
CSEL_02.0_input.tab
CSEL_03.4_input.tab... (2 Replies)
Hello.
I cannot write a command without using eval.
Any help is welcome
Note 1 : What does the function SOMETHING has no importance.
Note 2 : What does the command find has no importance.
It is an expansion variable problem : where to put or or or anythings else
What works (FILTRE_1... (8 Replies)
I have made the following examples that print various parameter expansions
text: iv-hhz-sac/hpac/hhz.d/iv.hpac..hhz.d.2016.250.070018.sac
(text%.*): iv-hhz-sac/hpac/hhz.d/iv.hpac..hhz.d.2016.250.070018
(text%%.*): iv-hhz-sac/hpac/hhz
(text#*.): d/iv.hpac..hhz.d.2016.250.070018.sac... (2 Replies)
#!/bin/bash
SNMPW='/usr/bin/snmpwalk'
while read h i
do
loc=$($SNMPW -v3 -u 'Myusername' -l authPriv -a SHA -A 'Password1' -x AES -X 'Password2' $i sysLocation.0 2>/dev/null)
loc=${loc:-" is not snmpable."}
loc=${loc##*: }
loc=${loc//,/}
echo "$i,$h,$loc"
done < $1
My question is ... ... (1 Reply)
Hello All,
Could you please do help me here as I would like to perform parameter expansion in shell over a parameter expansion.
Let's say I have following variable.
path="/var/talend/nat/cdc"
Now to get only nat I could do following.
path1="${path%/*}"
path1="${path1##*/}"
Here... (8 Replies)
Discussion started by: RavinderSingh13
8 Replies
LEARN ABOUT DEBIAN
bio::featureio::gtf
Bio::FeatureIO::gtf(3pm) User Contributed Perl Documentation Bio::FeatureIO::gtf(3pm)NAME
Bio::FeatureIO::gtf - read write features in GTF format
SYNOPSIS
Bio::FeatureIO::gff
DESCRIPTION
GTF, is also known as GFF v2.5. This class is simply a subclass of Bio::FeatureIO::gff that initializes with -version => 2.5.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::FeatureIO::gtf(3pm)