My question is simple. I want to pass a single quote (') to be read as belonging as an addition to the letters C1', C2', C3', C4', C5', O1', O2', O3', O4' & O5' to the program voronota query-contacts which would be run through shell script and should print out numerical values. I tried writing C1\', C2\', C3\', etc. but am getting no results (blank when I am expecting numbers). Thus the question is how could I pass these letters with a single quote as an argument to voronota query-contacts command? The script is this:
The output through command line in all the ways described I get is a blank one:
Thank you very much for your help. I will look forward to your responses.
Hi there
I have a data file like so below
'A/1';'T100002';'T100002';'';'01/05/2004';'31/05/2004';'01/06/2004';'08/06/2004';'1.36';'16';'0.22';'0';'0';'1.58';'0';'0';'0';'0';'0';'0';'clientes\resumen\200405\resumen_T100002_T100002_1.pdf';'';'0001';'S';'20040501';'';'02';'0';'S';'N'... (3 Replies)
Hi
I have a shell script with many lines as below:
comment on column dcases.proj_seq_num is dcases_1sq;
....
....
I want the above script to be as below:
comment on column dcases.proj_seq_num is 'dcases_1sq';
I want to have single quotes like that as above for the entire shell... (2 Replies)
Hi,
I've been trying to write a regex to use in egrep (in a shell script) that'll fetch the names of all the files that match a particular pattern. I expect to match the following line in a file:
Name = "abc"
The regex I'm using to match the same is:
egrep -l '(^) *= *" ** *"$' /PATH_TO_SEARCH... (6 Replies)
Hi I want to replace single quote with two single quotes in a perl string.
If the string is <It's Simpson's book> It should become <It''s Simpson''s book> (3 Replies)
hi all,
i have a data in the file which of the formate :
100,102,103
and the required formate is
\'100\',\'102\',\'103
Idealy we need to replace , with \',\'
Regards
arkesh (2 Replies)
From:
1,2,3,4,5,This is a test
6,7,8,9,0,"This, is a test"
1,9,2,8,3,"This is a ""test"""
4,7,3,1,8,""""
To:
1,2,3,4,5,This is a test
6,7,8,9,0,"This; is a test"
1,9,2,8,3,"This is a ''test''"
4,7,3,1,8,"''"Is there an easy syntax I'm overlooking? There will always be an odd number... (5 Replies)
Hello,
I'd like to print line if column 5th doesn't match with exm. But to reach there I have to make sure I match single quote.
I'm struggling to match that.
I've input file like:
Warning: Variants 'exm480340' and '5:137534453:G:C' have the same position.
Warning: Variants 'exm480345'... (9 Replies)
Hi all...
(This is Don's domain.)
I have come across an anomaly in sh and dash compared to bash.
It involves echoing a character set to a file in sh and dash compared to bash.
It is probably easier to show the code and results first.
#!/usr/local/bin/dash
#!/bin/sh
#!/bin/bash
echo... (4 Replies)
Discussion started by: wisecracker
4 Replies
LEARN ABOUT DEBIAN
rings3d
RINGS3D(1) General Commands Manual RINGS3D(1)NAME
rigns3d - produces a file of ring-filling triangles from a PDB file
SYNOPSIS
rings3d [-bases] [-protein] [-sugars] < infile.pdb > outfile.r3d
rings3d searches through a PDB file looking for residues containing 5- or 6-membered rings, then produces a Raster3D output file of ring-
filling triangles.
rings3d matches residue types from an internal list of residue and atom names. It will fail to find residues not in its list, and fail to
recognize atoms with non-standard names.
EXAMPLES
render a DNA molecule with the bases filled in:
cat $R3D_LIB/dna.colours dna.pdb | rods -radius 0.05 > temp.1
rings3d -bases < dna.pdb > temp.2
cat temp.1 temp.2 | render -tiff dna.tiff
OPTIONS -bases
Fills in purine and pyrimidine rings from A C G T U residues.
-protein
Fills in sidechain rings of HIS PHE TRP and TYR residues.
-sugars
[This is the default] Fills in pyranose rings of GAL GLC NAG NGA MAN SIA residues.
BUGS
limited residue types
The database of residue types should be kept externally, so you don't have to rebuild the program to add a new type. There should be an
option to search for ring systems in un-recognized residue types. crinkled planes
There should be an option to do a least-squares best plane through supposedly flat rings. Then again, seeing a crease in a "flat" ring may
force people to consider whether their planarity restraints are tight enough.
SOURCE
anonymous ftp site:
ftp.bmsc.washington.edu
web URL:
http://www.bmsc.washington.edu/raster3d/raster3d.html
contact:
Ethan A Merritt
Dept of Biological Structure Box 357742
University of Washington, Seattle WA 98195
merritt@u.washington.edu
SEE ALSO
Raster3D(l)
AUTHORS
Ethan A Merritt.
This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).
Raster3DRINGS3D(1)