Sponsored Content
Top Forums UNIX for Beginners Questions & Answers How to append two fasta files? Post 303036067 by yifangt on Thursday 13th of June 2019 11:26:32 AM
Old 06-13-2019
That's exactly what I meant!

Thanks RudiC!
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

append two files

Hi, I have two files where 1 contains data and the other contains strings eg file 1 -0.00000 0.00000 0.00000 0.00000 0.00000 0.80000 0.50000 0.50000 0.60000 0.50000 0.50000 0.20000 -0.00000 0.00000 0.40000 file 2 F F F F F F T T T T T T T T T How to I append file2 to file 1 to... (1 Reply)
Discussion started by: princessotes
1 Replies

2. UNIX for Dummies Questions & Answers

grep FASTA files

I would like to extract the sequences larger than 10 bases but shorter than 18 along with the identifier from a FASTA file that looks like this: > Seq I ACGACTAGACGATAGACGATAGA > Seq 2 ACGATGACGTAGCAGT > Seq 3 ACGATACGAT I know I can extract the IDs alone with the following code grep... (3 Replies)
Discussion started by: Xterra
3 Replies

3. UNIX for Dummies Questions & Answers

renaming (renumbering) fasta files

I have a fasta file that looks like this: >Noname ACCAAAATAATTCATGATATACTCAGATCCATCTGAGGGTTTCACCACTTGTAGAGCTAT CAGAAGAATGTCAATCAACTGTCCGAGAAAAAAGAATCCCAGG >Noname ACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCCTG ACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGA ... I want to... (2 Replies)
Discussion started by: Oyster
2 Replies

4. Shell Programming and Scripting

append to two files

I tried to write a script ( not working) to append first value from mylist to a file called my myfirstResult and to another called mysecondResult awk ' {print $1} >> myfirsResult ' < mylist awk ' {print $1} >> mysecondResult ' < mylist $ cat mylist A 02/16/2012 B 02/19/2012 C... (3 Replies)
Discussion started by: Sara_84
3 Replies

5. UNIX for Dummies Questions & Answers

Breaking a fasta formatted file into multiple files containing each gene separately

Hey, I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time: for i in *.rtf.out do awk '/^>/{f=++d".fasta"} {print > $i.out}' $i done (1 Reply)
Discussion started by: Ann Mc Cartney
1 Replies

6. UNIX for Dummies Questions & Answers

Append Files

Hi All, I have to append 2 lines at the end of a text file. If those 2 lines are already there then do not append else append the 2 lines to the text file. Eg: I have a text file, file.txt This text file might look like this, /home/kp/make.jsp /home/pk/model.jsp I have to append... (1 Reply)
Discussion started by: pavan_test
1 Replies

7. UNIX for Dummies Questions & Answers

Append file name to fasta file headers in Linux

How do we append the file name to fasta file headers in multiple fasta-files in Linux? (10 Replies)
Discussion started by: Mauve
10 Replies

8. Shell Programming and Scripting

Unzip all the files with subdirectories present and append a part of string from the main .zip files

Hi frnds, My requirement is I have a zip file with name say eg: test_ABC_UH_ccde2a_awdeaea_20150422.zip within that there are subdirectories on each directory we again have .zip files and in that we have files like mama20150422.gz and so on. Iam in need of a bash script so that it unzips... (0 Replies)
Discussion started by: Ravi Kishore
0 Replies

9. Shell Programming and Scripting

Append string to all the files inside a directory excluding subdirectories and .zip files

Hii, Could someone help me to append string to the starting of all the filenames inside a directory but it should exclude .zip files and subdirectories. Eg. file1: test1.log file2: test2.log file3 test.zip After running the script file1: string_test1.log file2: string_test2.log file3:... (4 Replies)
Discussion started by: Ravi Kishore
4 Replies

10. Shell Programming and Scripting

Help with reformat single-line multi-fasta into multi-line multi-fasta

Input File: >Seq1 ASDADAFASFASFADGSDGFSDFSDFSDFSDFSDFSDFSDFSDFSDFSDFSD >Seq2 SDASDAQEQWEQeqAdfaasd >Seq3 ASDSALGHIUDFJANCAGPATHLACJHPAUTYNJKG ...... Desired Output File >Seq1 ASDADAFASF ASFADGSDGF SDFSDFSDFS DFSDFSDFSD FSDFSDFSDF SD >Seq2 (4 Replies)
Discussion started by: patrick87
4 Replies
Mojo::Asset(3pm)					User Contributed Perl Documentation					  Mojo::Asset(3pm)

NAME
Mojo::Asset - HTTP 1.1 content storage base class SYNOPSIS
use Mojo::Base 'Mojo::Asset'; DESCRIPTION
Mojo::Asset is an abstract base class for HTTP 1.1 content storage. ATTRIBUTES
Mojo::Asset implements the following attributes. "end_range" my $end = $asset->end_range; $asset = $asset->end_range(8); Pretend file ends earlier. "start_range" my $start = $asset->start_range; $asset = $asset->start_range(0); Pretend file starts later. METHODS
Mojo::Asset inherits all methods from Mojo::EventEmitter and implements the following new ones. "add_chunk" $asset = $asset->add_chunk('foo bar baz'); Add chunk of data to asset, meant to be overloaded in a subclass. "contains" my $position = $asset->contains('bar'); Check if asset contains a specific string, meant to be overloaded in a subclass. "get_chunk" my $chunk = $asset->get_chunk($offset); Get chunk of data starting from a specific position, meant to be overloaded in a subclass. "is_file" my $false = $asset->is_file; False. "move_to" $asset = $asset->move_to('/home/sri/foo.txt'); Move asset data into a specific file, meant to be overloaded in a subclass. "size" my $size = $asset->size; Size of asset data in bytes, meant to be overloaded in a subclass. "slurp" my $string = $asset->slurp; Read all asset data at once. Meant to be overloaded in a subclass. SEE ALSO
Mojolicious, Mojolicious::Guides, <http://mojolicio.us>. perl v5.14.2 2012-09-05 Mojo::Asset(3pm)
All times are GMT -4. The time now is 09:39 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy