06-13-2019
That's exactly what I meant!
Thanks RudiC!
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hi, I have two files where 1 contains data and the other contains strings eg
file 1
-0.00000 0.00000 0.00000
0.00000 0.00000 0.80000
0.50000 0.50000 0.60000
0.50000 0.50000 0.20000
-0.00000 0.00000 0.40000
file 2
F F F
F F F
T T T
T T T
T T T
How to I append file2 to file 1 to... (1 Reply)
Discussion started by: princessotes
1 Replies
2. UNIX for Dummies Questions & Answers
I would like to extract the sequences larger than 10 bases but shorter than 18 along with the identifier from a FASTA file that looks like this:
> Seq I
ACGACTAGACGATAGACGATAGA
> Seq 2
ACGATGACGTAGCAGT
> Seq 3
ACGATACGAT
I know I can extract the IDs alone with the following code
grep... (3 Replies)
Discussion started by: Xterra
3 Replies
3. UNIX for Dummies Questions & Answers
I have a fasta file that looks like this:
>Noname
ACCAAAATAATTCATGATATACTCAGATCCATCTGAGGGTTTCACCACTTGTAGAGCTAT
CAGAAGAATGTCAATCAACTGTCCGAGAAAAAAGAATCCCAGG
>Noname
ACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCCTG
ACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGA
...
I want to... (2 Replies)
Discussion started by: Oyster
2 Replies
4. Shell Programming and Scripting
I tried to write a script ( not working) to append first value from mylist to a file called my myfirstResult and to another called mysecondResult
awk ' {print $1} >> myfirsResult ' < mylist
awk ' {print $1} >> mysecondResult ' < mylist
$ cat mylist
A 02/16/2012
B 02/19/2012
C... (3 Replies)
Discussion started by: Sara_84
3 Replies
5. UNIX for Dummies Questions & Answers
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
Discussion started by: Ann Mc Cartney
1 Replies
6. UNIX for Dummies Questions & Answers
Hi All,
I have to append 2 lines at the end of a text file. If those 2 lines are already there then do not append else append the 2 lines to the text file.
Eg: I have a text file, file.txt
This text file might look like this,
/home/kp/make.jsp
/home/pk/model.jsp
I have to append... (1 Reply)
Discussion started by: pavan_test
1 Replies
7. UNIX for Dummies Questions & Answers
How do we append the file name to fasta file headers in multiple fasta-files in Linux? (10 Replies)
Discussion started by: Mauve
10 Replies
8. Shell Programming and Scripting
Hi frnds,
My requirement is I have a zip file with name say eg: test_ABC_UH_ccde2a_awdeaea_20150422.zip
within that there are subdirectories on each directory we again have .zip files and in that we have files like mama20150422.gz and so on.
Iam in need of a bash script so that it unzips... (0 Replies)
Discussion started by: Ravi Kishore
0 Replies
9. Shell Programming and Scripting
Hii,
Could someone help me to append string to the starting of all the filenames inside a directory but it should exclude .zip files and subdirectories.
Eg.
file1: test1.log
file2: test2.log
file3 test.zip
After running the script
file1: string_test1.log
file2: string_test2.log
file3:... (4 Replies)
Discussion started by: Ravi Kishore
4 Replies
10. Shell Programming and Scripting
Input File:
>Seq1
ASDADAFASFASFADGSDGFSDFSDFSDFSDFSDFSDFSDFSDFSDFSDFSD
>Seq2
SDASDAQEQWEQeqAdfaasd
>Seq3
ASDSALGHIUDFJANCAGPATHLACJHPAUTYNJKG
......
Desired Output File
>Seq1
ASDADAFASF
ASFADGSDGF
SDFSDFSDFS
DFSDFSDFSD
FSDFSDFSDF
SD
>Seq2 (4 Replies)
Discussion started by: patrick87
4 Replies
LEARN ABOUT DEBIAN
evolver
Evolver(1) BSD General Commands Manual Evolver(1)
NAME
evolver -- The Surface Evolver, minimize energy of a surface
SYNOPSIS
evolver [-adehimqwxy] [-f file] [-pN] [datafile]
DESCRIPTION
The Surface Evolver is a program that minimizes the energy of a triangulated surface according to designated energies and constraints. This
man page only documents command line options and environment variables. The full package and documentation are available at
http://www.susqu.edu/brakke/evolver.
Command line options:
datafile
Text file defining a surface. If omitted, you will be prompted.
-a Autoconvert to named quantities when needed (default is on); use "-a-" to deactivate autoconversion.
-d Begin with parser debugging on (equivalent to "debug" runtime command). Beware of copious output.
-e Echo stdin to stdout; meant for testing piped input.
-f file After loading datafile, read commands from file, then command line prompt.
-h Print help for command line options.
-i Preserve datafile numbers for element id's, rather than renumbering.
-m Begin with memory debugging on (equivalent to "memdebug" runtime command). Beware of copious output.
-pN Run with N concurrent processes.
-q Convert to named quantities at start (equivalent to "convert_to_quantities" runtime command).
-Q Suppress echoing of "read" section of datafile, and other files read in.
-w Exit immediately after any warning or error message; meant for batch runs.
-x Exit immediately after any error message; meant for batch runs.
-y Break to user prompt after any warning message.
ENVIRONMENT VARIABLES
EVOLVERPATH Colon-separated list of paths automatically searched for datafiles, included files, or help documentation.
FURTHER DOCUMENTATION
See manual224.pdf in the Evolver distribution, browse evolver.htm in the doc subdirectory of the distribution, or browse the documentation
on-line at http://www.susqu.edu/brakke/evolver/html/evolver.htm
WEBSITE
The Surface Evolver home page is http://www.susqu.edu/brakke/evolver.
BUGS
Send bug reports to brakke@susqu.edu. Please include the datafile and exact instructions for reproducing the problem.
June 1, 2019