Hi, I have two files where 1 contains data and the other contains strings eg
file 1
-0.00000 0.00000 0.00000
0.00000 0.00000 0.80000
0.50000 0.50000 0.60000
0.50000 0.50000 0.20000
-0.00000 0.00000 0.40000
file 2
F F F
F F F
T T T
T T T
T T T
How to I append file2 to file 1 to... (1 Reply)
I would like to extract the sequences larger than 10 bases but shorter than 18 along with the identifier from a FASTA file that looks like this:
> Seq I
ACGACTAGACGATAGACGATAGA
> Seq 2
ACGATGACGTAGCAGT
> Seq 3
ACGATACGAT
I know I can extract the IDs alone with the following code
grep... (3 Replies)
I have a fasta file that looks like this:
>Noname
ACCAAAATAATTCATGATATACTCAGATCCATCTGAGGGTTTCACCACTTGTAGAGCTAT
CAGAAGAATGTCAATCAACTGTCCGAGAAAAAAGAATCCCAGG
>Noname
ACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCCTG
ACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGA
...
I want to... (2 Replies)
I tried to write a script ( not working) to append first value from mylist to a file called my myfirstResult and to another called mysecondResult
awk ' {print $1} >> myfirsResult ' < mylist
awk ' {print $1} >> mysecondResult ' < mylist
$ cat mylist
A 02/16/2012
B 02/19/2012
C... (3 Replies)
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
Hi All,
I have to append 2 lines at the end of a text file. If those 2 lines are already there then do not append else append the 2 lines to the text file.
Eg: I have a text file, file.txt
This text file might look like this,
/home/kp/make.jsp
/home/pk/model.jsp
I have to append... (1 Reply)
Hi frnds,
My requirement is I have a zip file with name say eg: test_ABC_UH_ccde2a_awdeaea_20150422.zip
within that there are subdirectories on each directory we again have .zip files and in that we have files like mama20150422.gz and so on.
Iam in need of a bash script so that it unzips... (0 Replies)
Hii,
Could someone help me to append string to the starting of all the filenames inside a directory but it should exclude .zip files and subdirectories.
Eg.
file1: test1.log
file2: test2.log
file3 test.zip
After running the script
file1: string_test1.log
file2: string_test2.log
file3:... (4 Replies)
GIT-CHERRY(1) Git Manual GIT-CHERRY(1)NAME
git-cherry - Find commits not merged upstream
SYNOPSIS
git cherry [-v] [<upstream> [<head> [<limit>]]]
DESCRIPTION
The changeset (or "diff") of each commit between the fork-point and <head> is compared against each commit between the fork-point and
<upstream>. The commits are compared with their patch id, obtained from the git patch-id program.
Every commit that doesn't exist in the <upstream> branch has its id (sha1) reported, prefixed by a symbol. The ones that have equivalent
change already in the <upstream> branch are prefixed with a minus (-) sign, and those that only exist in the <head> branch are prefixed
with a plus (+) symbol:
__*__*__*__*__> <upstream>
/
fork-point
\__+__+__-__+__+__-__+__> <head>
If a <limit> has been given then the commits along the <head> branch up to and including <limit> are not reported:
__*__*__*__*__> <upstream>
/
fork-point
\__*__*__<limit>__-__+__> <head>
Because git cherry compares the changeset rather than the commit id (sha1), you can use git cherry to find out if a commit you made locally
has been applied <upstream> under a different commit id. For example, this will happen if you're feeding patches <upstream> via email
rather than pushing or pulling commits directly.
OPTIONS -v
Verbose.
<upstream>
Upstream branch to compare against. Defaults to the first tracked remote branch, if available.
<head>
Working branch; defaults to HEAD.
<limit>
Do not report commits up to (and including) limit.
SEE ALSO git-patch-id(1)GIT
Part of the git(1) suite
Git 1.7.10.4 11/24/2012 GIT-CHERRY(1)