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Top Forums UNIX for Beginners Questions & Answers How to extract the partial matching strings among two files? Post 303035966 by anbu23 on Tuesday 11th of June 2019 03:39:29 AM
Old 06-11-2019
Code:
$ awk -F'\\]|\\[|-|:' -v RS='\n>' ' NR == FNR { gsub(" ",""); arr[$3]=1;next} arr[$2]{print ">" $0} ' f1 f2
>Contig_152:50833-51615
CGGAGTAGCTTCGATCAGCGTGACCGGTACCGAGCGACCGTCTTCAGTGAAGACGCGGCT
CATACCAGCCTTGCGGCCCACGAAGCCCAACGAATATTTCTTCGTCATGGTCGTAGTCCT
CAGGTCAGCTTGATCTGGACGTCGACGCCAGCCGCGAGTTCGAGCTTCATCAGCGCGTCC
ACGGTCTTGTCGTTCGGGTCGACGATATCGAGCACACGCTTGTGCGTGCGGGTTTCGTAT
TGG
>Contig_152:50215-50829
TGCCAGCCACTCCTCGACCTTCTTGACCGCGTCGGCGGTGATCACGACCGTATCGGCCCC
GACCAGAGCGACCGGATCCAGACCCTGCACGTCACGCACCTGCACATACGGCAGGTTGCG
AGCGGACAGATACAGGTGCTCGGAAGCCTCTTCGGTGACGATCAGCGGGCGCTTGCCCAC
>Contig_152:45550-46116
GTTACGGAACGGGAACTTGAACGCTGCCAGCAGCGCCTTCGCTTCCGCATCCGTCTTGGC
GGTGGTGGTGATGGCGATATCCATACCGCGGATCGCGTCGACGGCGTCGAAGTCGATTTC
>Contig_152:44079-44618
AGCCTTCTTGGCTTCCTTGCGAATGATGACTTCACCGGCGTACTTCACACCCTTGCCCTT
GTAGGGCTCCGGCGGACGGAAACCGCGAATCTTGGCGGCAACTTCGCCGACGCGCTGCTT

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PARSE_STR(3)								 1							      PARSE_STR(3)

parse_str - Parses the string into variables

SYNOPSIS
void parse_str (string $str, [array &$arr]) DESCRIPTION
Parses $str as if it were the query string passed via a URL and sets variables in the current scope. Note To get the current QUERY_STRING, you may use the variable $_SERVER['QUERY_STRING']. Also, you may want to read the section on vari- ables from external sources. Note The magic_quotes_gpc setting affects the output of this function, as parse_str(3) uses the same mechanism that PHP uses to populate the $_GET, $_POST, etc. variables. PARAMETERS
o $str - The input string. o $arr - If the second parameter $arr is present, variables are stored in this variable as array elements instead. RETURN VALUES
No value is returned. EXAMPLES
Example #1 Using parse_str(3) <?php $str = "first=value&arr[]=foo+bar&arr[]=baz"; parse_str($str); echo $first; // value echo $arr[0]; // foo bar echo $arr[1]; // baz parse_str($str, $output); echo $output['first']; // value echo $output['arr'][0]; // foo bar echo $output['arr'][1]; // baz ?> SEE ALSO
parse_url(3), pathinfo(3), http_build_query(3), get_magic_quotes_gpc(3), urldecode(3). PHP Documentation Group PARSE_STR(3)
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