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Top Forums UNIX for Beginners Questions & Answers How to extract the partial matching strings among two files? Post 303035966 by anbu23 on Tuesday 11th of June 2019 03:39:29 AM
Old 06-11-2019
Code:
$ awk -F'\\]|\\[|-|:' -v RS='\n>' ' NR == FNR { gsub(" ",""); arr[$3]=1;next} arr[$2]{print ">" $0} ' f1 f2
>Contig_152:50833-51615
CGGAGTAGCTTCGATCAGCGTGACCGGTACCGAGCGACCGTCTTCAGTGAAGACGCGGCT
CATACCAGCCTTGCGGCCCACGAAGCCCAACGAATATTTCTTCGTCATGGTCGTAGTCCT
CAGGTCAGCTTGATCTGGACGTCGACGCCAGCCGCGAGTTCGAGCTTCATCAGCGCGTCC
ACGGTCTTGTCGTTCGGGTCGACGATATCGAGCACACGCTTGTGCGTGCGGGTTTCGTAT
TGG
>Contig_152:50215-50829
TGCCAGCCACTCCTCGACCTTCTTGACCGCGTCGGCGGTGATCACGACCGTATCGGCCCC
GACCAGAGCGACCGGATCCAGACCCTGCACGTCACGCACCTGCACATACGGCAGGTTGCG
AGCGGACAGATACAGGTGCTCGGAAGCCTCTTCGGTGACGATCAGCGGGCGCTTGCCCAC
>Contig_152:45550-46116
GTTACGGAACGGGAACTTGAACGCTGCCAGCAGCGCCTTCGCTTCCGCATCCGTCTTGGC
GGTGGTGGTGATGGCGATATCCATACCGCGGATCGCGTCGACGGCGTCGAAGTCGATTTC
>Contig_152:44079-44618
AGCCTTCTTGGCTTCCTTGCGAATGATGACTTCACCGGCGTACTTCACACCCTTGCCCTT
GTAGGGCTCCGGCGGACGGAAACCGCGAATCTTGGCGGCAACTTCGCCGACGCGCTGCTT

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Perl::Critic::Policy::Variables::RequireNegativeIndices(User Contributed Perl DocumentPerl::Critic::Policy::Variables::RequireNegativeIndices(3pm)

NAME
Perl::Critic::Policy::Variables::RequireNegativeIndices - Negative array index should be used. AFFILIATION
This Policy is part of the core Perl::Critic distribution. DESCRIPTION
Conway points out that $arr[$#arr]; $arr[$#arr-1]; $arr[@arr-1]; $arr[@arr-2]; are equivalent to $arr[-1]; $arr[-2]; $arr[-1]; $arr[-2]; and the latter are more readable, performant and maintainable. The latter is because the programmer no longer needs to keep two variable names matched. This policy notices all of the simple forms of the above problem, but does not recognize any of these more complex examples: $some->[$data_structure]->[$#{$some->[$data_structure]} -1]; my $ref = @arr; $ref->[$#arr]; CONFIGURATION
This Policy is not configurable except for the standard options. AUTHOR
Chris Dolan <cdolan@cpan.org> COPYRIGHT
Copyright (c) 2006-2011 Chris Dolan. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.14.2 2012-06-07 Perl::Critic::Policy::Variables::RequireNegativeIndices(3pm)
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