06-03-2019
Quote:
Originally Posted by
RudiC
Hmmm - I don't see any "ALA" in your recent sample data file - what be the desired result from it? I see one each of the 4 / ARG, 5 / SER, and 6 / ASP combinations...
As I told in the posts before the AAA value can be any of the 20 amino acids (ALA, ARG, ASN, ASP, CYS, GLN, GLY, GLU, HIS, ILE, LEU, LYS, MET, PHE, PRO, SER, THR, TRP, TYR or VAL). In the first example it was ALA which I posted, now I posted with ARG, SER and ASP, but basically the most important value is AAA which can get any value of the 20 amino acids and for that I need to calculate the count for that specific amino acid (it can be chosen as ALA, ARG, ASN or any other of the 20 and for that I need to calculate the count of that amino acid without duplication). To make it clearer from the recent example I need to get only
1 ARG from the same numbering as
r(4) that is given
11 times. For SER and ARG it also has to be
1 each even though they are repeated
r<5> 6 times and
r<6> 8 times respectively. However in the data file these specific AAA occurences are repeated in the data set with different integer
r<x> values where
x is from 1 to 1000.
Last edited by Aurimas; 06-03-2019 at 07:26 AM..
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LEARN ABOUT REDHAT
initlog
initlog(8) System Manager's Manual initlog(8)
NAME
initlog - log messages and events to the system logger
SYNOPSIS
initlog [-cefnpqrs] [--cmd=ARG] [--event=ARG] [--facility=ARG] [--name=ARG] [--priority=ARG] [--run=ARG] [--string=ARG]
DESCRIPTION
initlog logs messages and events to the system logger. It is mainly designed for use in init scripts. initlog reads a configuration file
/etc/initlog.conf by default, to determine its settings. Any line preceded with a # is a comment, and the following configuration direc-
tives are recognized:
facility <logging facility>
Sets the default logging facility
priority <logging priority>
Sets the default logging priority
ignore <regexp>
Messages that match the regular expression will not be logged.
initlog behavior can also be configured by command-line options.
OPTIONS
-c, --cmd=[program]
Execute the specified program, logging anything output to stdout or stderr.
-e, --event=[number]
Logs that the specified event happened. Used in conjuction with --name. Currently specified events are:
1 the action completed successfully
2 the action failed
3 the action was cancelled at user request
4 the action failed due to the failure of a dependent action
-f, --facility=[facility]
Log at the specified syslog facility. The default is daemon (see syslog(3)).
-n, --name=[string]
Log the event under the specified string, such as "inetd".
-p, --priority=[priority]
Log at the specified syslog priority. The default is notice (see syslog(3)).
-q Do not print the program's output, unless it exits with a non-zero exit code.
-r, --run=[program]
Execute the specified program, with an open file descriptor so that the program can pass back commands to initlog.
-s, --string=[string]
Log the specified string to the logger.
--conf=[file]
Specifies an alternate configuration file.
FILES
/etc/initlog.conf
SEE ALSO
syslog(3), logger(1)
Sun Jan 24 1999 initlog(8)