06-03-2019
Quote:
Originally Posted by
RudiC
Hmmm - I don't see any "ALA" in your recent sample data file - what be the desired result from it? I see one each of the 4 / ARG, 5 / SER, and 6 / ASP combinations...
As I told in the posts before the AAA value can be any of the 20 amino acids (ALA, ARG, ASN, ASP, CYS, GLN, GLY, GLU, HIS, ILE, LEU, LYS, MET, PHE, PRO, SER, THR, TRP, TYR or VAL). In the first example it was ALA which I posted, now I posted with ARG, SER and ASP, but basically the most important value is AAA which can get any value of the 20 amino acids and for that I need to calculate the count for that specific amino acid (it can be chosen as ALA, ARG, ASN or any other of the 20 and for that I need to calculate the count of that amino acid without duplication). To make it clearer from the recent example I need to get only
1 ARG from the same numbering as
r(4) that is given
11 times. For SER and ARG it also has to be
1 each even though they are repeated
r<5> 6 times and
r<6> 8 times respectively. However in the data file these specific AAA occurences are repeated in the data set with different integer
r<x> values where
x is from 1 to 1000.
Last edited by Aurimas; 06-03-2019 at 07:26 AM..
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LEARN ABOUT DEBIAN
xml::easy::classify
XML::Easy::Classify(3pm) User Contributed Perl Documentation XML::Easy::Classify(3pm)
NAME
XML::Easy::Classify - classification of XML-related items
SYNOPSIS
use XML::Easy::Classify qw(
is_xml_name check_xml_name
is_xml_encname check_xml_encname
is_xml_chardata check_xml_chardata
is_xml_attributes check_xml_attributes
is_xml_content_object check_xml_content_object
is_xml_content_twine check_xml_content_twine
is_xml_content check_xml_content
is_xml_element check_xml_element
);
if(is_xml_name($arg)) { ...
check_xml_name($arg);
if(is_xml_encname($arg)) { ...
check_xml_encname($arg);
if(is_xml_chardata($arg)) { ...
check_xml_chardata($arg);
if(is_xml_attributes($arg)) { ...
check_xml_attributes($arg);
if(is_xml_content_object($arg)) { ...
check_xml_content_object($arg);
if(is_xml_content_twine($arg)) { ...
check_xml_content_twine($arg);
if(is_xml_content($arg)) { ...
check_xml_content($arg);
if(is_xml_element($arg)) { ...
check_xml_element($arg);
DESCRIPTION
This module provides various type-testing functions, relating to data types used in the XML::Easy ensemble. These are mainly intended to
be used to enforce validity of data being processed by XML-related functions.
There are two flavours of function in this module. Functions of the first flavour only provide type classification, to allow code to
discriminate between argument types. Functions of the second flavour package up the most common type of type discrimination: checking that
an argument is of an expected type. The functions come in matched pairs.
FUNCTIONS
Each of these functions takes one scalar argument (ARG) to be tested. Any scalar value is acceptable for the argument to be tested. Each
"is_" function returns a simple truth value result, which is true iff ARG is of the type being checked for. Each "check_" function will
return normally if the argument is of the type being checked for, or will "die" if it is not.
is_xml_name(ARG)
check_xml_name(ARG)
Check whether ARG is a plain string satisfying the XML name syntax. (Such names are used to identify element types, attributes,
entities, and other things in XML.)
is_xml_encname(ARG)
check_xml_encname(ARG)
Check whether ARG is a plain string satisfying the XML character encoding name syntax.
is_xml_chardata(ARG)
check_xml_chardata(ARG)
Check whether ARG is a plain string consisting of a sequence of characters that are acceptable to XML. Such a string is valid as data
in an XML element (where it may be intermingled with subelements) or as the value of an element attribute.
is_xml_attributes(ARG)
check_xml_attributes(ARG)
Check whether ARG is a reference to a hash that is well-formed as an XML element attribute set. To be well-formed, each key in the
hash must be an XML name string, and each value must be an XML character data string.
is_xml_content_object(ARG)
check_xml_content_object(ARG)
Check whether ARG is a reference to an XML::Easy::Content object, and thus represents a chunk of XML content.
is_xml_content_twine(ARG)
check_xml_content_twine(ARG)
Check whether ARG is a reference to a twine array (see "Twine" in XML::Easy::NodeBasics), and thus represents a chunk of XML content.
is_xml_content_array(ARG)
Deprecated alias for "is_xml_content_twine".
is_xml_content(ARG)
check_xml_content(ARG)
Check whether ARG is a reference to either an XML::Easy::Content object or a twine array (see "Twine" in XML::Easy::NodeBasics), and
thus represents a chunk of XML content.
is_xml_element(ARG)
check_xml_element(ARG)
Check whether ARG is a reference to an XML::Easy::Element object, and thus represents an XML element.
SEE ALSO
Params::Classify, XML::Easy::NodeBasics
AUTHOR
Andrew Main (Zefram) <zefram@fysh.org>
COPYRIGHT
Copyright (C) 2009, 2010, 2011 Andrew Main (Zefram) <zefram@fysh.org>
LICENSE
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.14.2 2011-11-16 XML::Easy::Classify(3pm)