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Full Discussion: Duplication | awk | result
Top Forums UNIX for Beginners Questions & Answers Duplication | awk | result Post 303035782 by Aurimas on Monday 3rd of June 2019 05:27:39 AM
Old 06-03-2019
Quote:
Originally Posted by RudiC
Hmmm - I don't see any "ALA" in your recent sample data file - what be the desired result from it? I see one each of the 4 / ARG, 5 / SER, and 6 / ASP combinations...
As I told in the posts before the AAA value can be any of the 20 amino acids (ALA, ARG, ASN, ASP, CYS, GLN, GLY, GLU, HIS, ILE, LEU, LYS, MET, PHE, PRO, SER, THR, TRP, TYR or VAL). In the first example it was ALA which I posted, now I posted with ARG, SER and ASP, but basically the most important value is AAA which can get any value of the 20 amino acids and for that I need to calculate the count for that specific amino acid (it can be chosen as ALA, ARG, ASN or any other of the 20 and for that I need to calculate the count of that amino acid without duplication). To make it clearer from the recent example I need to get only 1 ARG from the same numbering as r(4) that is given 11 times. For SER and ARG it also has to be 1 each even though they are repeated r<5> 6 times and r<6> 8 times respectively. However in the data file these specific AAA occurences are repeated in the data set with different integer r<x> values where x is from 1 to 1000.
Last edited by Aurimas; 06-03-2019 at 07:26 AM..
 

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LEARN ABOUT REDHAT

xml::grove::subst

XML::Grove::Subst(3)					User Contributed Perl Documentation				      XML::Grove::Subst(3)

NAME

       XML::Grove::Subst - substitute values into a template

SYNOPSIS

	use XML::Grove::Subst;

	# Using subst method on XML::Grove::Document or XML::Grove::Element:
	$new_grove = $source_grove->subst( ARGS );
	$new_grove = $source_grove->subst_hash( ARG );

	# Using an XML::Grove::Subst instance:
	$subster = XML::Grove::Subst->new();
	$new_grove = $subster->subst( $source_grove, ARGS );
	$new_grove = $subster->subst_hash( $source_grove, ARG );

DESCRIPTION

       "XML::Grove::Subst" implements XML templates.  "XML::Grove::Subst" traverses through a source grove replacing all elements with names
       `"SUB:XXX"' or `"SUB:key"' with their corresponding values from ARGS (a list) or ARG (a hash), repsectively.

METHODS

       $grove_obj->subst( ARGS ) =item $subster->subst( $grove_obj, ARGS )
	   Search for `"SUB:XXX"' elements, where XXX is an array index, and replace the element with the value from ARGS, a list of values.  The
	   return value is a new grove with the substitutions applied.

       $grove_obj->subst_hash( ARG ) =item $subster->subst_hash( $grove_obj, ARG )
	   Search for `"SUB:key"' elements and replace the element with the value from ARG, a hash of values.  The hash key is taken from the
	   `"key"' attribute of the `"SUB:key"' element, for example, `"<SUB:key key='foo'>"'.	The return value is a new grove with the substitu-
	   tions applied.

EXAMPLE

       The following template, in a file `"template.xml"', could be used for a simple parts database conversion to HTML:

	   <html>
	     <head>
	       <title><SUB:key key='Name'></title>
	     </head>
	     <body>
	       <h1><SUB:key key='Name'></title>
	       <p>Information for part number <SUB:key key='Number'>:</p>
	       <SUB:key key='Description'>
	     </body>
	   </html>

       To use this template you would first parse it and convert it to a grove, and then use `"subst_hash()"' every time you needed a new page:

	   use XML::Parser::PerlSAX;
	   use XML::Grove;
	   use XML::Grove::Builder;
	   use XML::Grove::Subst;
	   use XML::Grove::PerlSAX;
	   use XML::Handler::XMLWriter;

	   # Load the template
	   $b = XML::Grove::Builder->new();
	   $p = XML::Parser::PerlSAX->new( Handler = $b );
	   $source_grove = $p->parse( Source => { SystemId => 'template.xml' } );

	   # Apply the substitutions
	   $new_grove = $source_grove->subst_hash( { Name => 'Acme DCX-2000 Filter',
						     Number => 'N4728',
						     Description => 'The Best' } );

	   # Write the new grove to standard output
	   $w = XML::Handler::XMLWriter->new();
	   $wp = XML::Grove::PerlSAX->new( Handler => $w );
	   $wp->parse( Source => { Grove => $new_grove } );

AUTHOR

       Ken MacLeod, ken@bitsko.slc.ut.us

SEE ALSO

       perl(1), XML::Grove(3)

       Extensible Markup Language (XML) <http://www.w3c.org/XML>

perl v5.8.0							    1999-08-25						      XML::Grove::Subst(3)
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