The output of the output of voronota get-balls-from-atoms-file --annotated for a certain .pdb file or input to awk looks like this (a sample, not full dataset) by your given code script:
but I want the output to awk through grep -o -i "$AAA" | wc -l | be a string that is later converted to integer, but if it is possible to avoid it - then that would be great.
I need to extract count of amino acids (ARG, SER, ASP in this case) but maybe it is possible from the script you shown before?
Hope this is what you asked
Last edited by Scrutinizer; 06-06-2019 at 12:38 PM..
Reason: quote tags -> code tags and icode tags
I was wondering if it was possible to tell awk to print the output of a command in the print.
.... | awk '{print $0}'
I would like it to print the date right before $0, so something like (this doesn't work though)
.... | awk '{print date $0}' (4 Replies)
Hi, I'm stuck in an awkward situation please help :)
I have two identical Seagate 80GB harddrives.
My objective is a bit strange.
1.I want to have a cloned disk as bootable backup
2.When booting using the master drive, I also want to mount the cloned backup disk so I can do incremental... (6 Replies)
I have a file, let's say 1.jpg, and I have a text file that contains a list of filenames I would like to duplicate 1.jpg as (i.e., 2.jpg, 3.jpg, 4.jpg, etc.). The filenames that I want to create are all on separate lines, one per line.
I'm sure there's a simple solution, but I'm not claiming to... (7 Replies)
Hi all,
Actually 2 files are there - file1, file2.
file1 contains --->
london
mosco
america
russia
mosco
file2 contains -->
europe
india
japan
mosco
england
london
Question is I want to print all the city names without duplication cities in those... (10 Replies)
i have many questions concerning the FD.
it was stated that "to redirect Error to output std, you have to write the following code"
# ls -alt FileNotThere File > logfile 2>&1
# cat logfile
ls: cannot access FileNotThere: No such file or directory
-rw-r--r-- 1 root root 0 2010-02-26... (9 Replies)
Hey,
I am making a Facebook like Page system as my first project, So far it's been bate in mind I did it from my 3DS at the same time as my PC gets replaced, So far it's turned out great. Now I am on to creation the blocking system I need to get the code to say If the user already likes the... (0 Replies)
Hi all,
I download and install lessfs for deduplication,
I copy files in /SharedFiles directory and lessfs work right and not store again copy files,
but, when i delete all files in /SharedFiles , not return free space to total space,
files not show in /SharedFiles , but not copy new files in... (3 Replies)
So while this seemed totally trivial it turned out to be much more difficult than I had thought.
I have a file with 3 rows, and I "just" want to add each field n number of times. E.g.
> cat file.txt
0.5
-0.1
0.6
for n=3 into:
cat newfile.txt
0.5 0.5 0.5
-0.1 -0.1 -0.1
0.6 0.6 0.6
I... (4 Replies)
Hello,
Giving those commands:
cat > myfile
1
2
3
^D
cat myfile | awk '{ s=s+$1 ; print s}'
The output is:
1
3
6
It seems like this command iterates each time on a different row so $1 is the first field of each row.. But what caused it to refer to each row ?.
What I mean... (3 Replies)
Discussion started by: uniran
3 Replies
LEARN ABOUT DEBIAN
rbash
RBASH(1) General Commands Manual RBASH(1)NAME
rbash - restricted bash, see bash(1)RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is
used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow-
ing are disallowed or not performed:
o changing directories with cd
o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV
o specifying command names containing /
o specifying a file name containing a / as an argument to the . builtin command
o specifying a filename containing a slash as an argument to the -p option to the hash builtin command
o importing function definitions from the shell environment at startup
o parsing the value of SHELLOPTS from the shell environment at startup
o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators
o using the exec builtin command to replace the shell with another command
o adding or deleting builtin commands with the -f and -d options to the enable builtin command
o using the enable builtin command to enable disabled shell builtins
o specifying the -p option to the command builtin command
o turning off restricted mode with set +r or set +o restricted.
These restrictions are enforced after any startup files are read.
When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script.
SEE ALSO bash(1)GNU Bash-4.0 2004 Apr 20 RBASH(1)