06-02-2019
Thank you, it works. However, the output now is
1 for all the cases, which is incorrect as I need to calculate AAA instances for 28 complexes (1st complex should give 8 as there are 8 times ALA is repeated (40 if we include that ALA is calculated 5 times with specific number (56 as was in our case)) , 2nd - 8 as well, 3rd - 8, 4th - 9 and so on) and it varies from
2 instances of ALA (10 times repeated (2 x 5)) and can get any value from
2 to
37 when AAA is chosen as ALA. Should I use
cat $i | and some specification of
grep before giving it to
awk?
The output I get now is:
Quote:
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
How is it possible to solve that so I get:
Quote:
8
8
8
9
18
15
9
14
19
7
14
11
8
11
18
11
10
19
34
5
2
12
7
16
7
4
29
3
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UNIQ(1) General Commands Manual UNIQ(1)
NAME
uniq - report repeated lines in a file
SYNOPSIS
uniq [ -udc [ +n ] [ -n ] ] [ input [ output ] ]
DESCRIPTION
Uniq reads the input file comparing adjacent lines. In the normal case, the second and succeeding copies of repeated lines are removed;
the remainder is written on the output file. Note that repeated lines must be adjacent in order to be found; see sort(1). If the -u flag
is used, just the lines that are not repeated in the original file are output. The -d option specifies that one copy of just the repeated
lines is to be written. The normal mode output is the union of the -u and -d mode outputs.
The -c option supersedes -u and -d and generates an output report in default style but with each line preceded by a count of the number of
times it occurred.
The n arguments specify skipping an initial portion of each line in the comparison:
-n The first n fields together with any blanks before each are ignored. A field is defined as a string of non-space, non-tab charac-
ters separated by tabs and spaces from its neighbors.
+n The first n characters are ignored. Fields are skipped before characters.
SEE ALSO
sort(1), comm(1)
UNIQ(1)