1. UNIX for Dummies Questions & Answers

Hey there, I'm a total newbie unix guy here and just picking this stuff up. Have a very small script I put together that works fine from the command line but not once I put it in a cron job. Searched and found this thread and am wondering it it has something to do with setting variables, though the... (7 Replies)

2. Shell Programming and Scripting

I have a very basic script that essentially sends a log file, via FTP, to a backup server. My cron entry to run this every night is: 55 23 * * * /usr/bin/archive_logs The script runs perfectly when executed manually, and actually worked via cron for about three weeks. However, it mysteriously... (3 Replies)

3. Shell Programming and Scripting

Hi all- I'm trying to search through some .gz log files to verify certain feeds have passed through our app. I have a small script that I wrote in hopes that I could automate the checking but haven't been able to get the zgrep to work. When I copy it to the command line directly it works... (2 Replies)

4. Shell Programming and Scripting

When I run this code from the command line works spinel.middlebury.edu:/u02/sct/banner/bandev2/middlebury/shl:DEV2$ ls ef* eftseq.dat spinel.middlebury.edu:/u02/sct/banner/bandev2/middlebury/shl:DEV2$ file_seq=$( < eftseq.dat) ... (1 Reply)

5. Shell Programming and Scripting

Ubuntu 9.10 is my linux distro Based on forums they say that the problem is with environment . here is my case: login as user, then sudo -s using this command: s3cmd put file s3://bucket >>worked! now here is the simple script intended for testing: #! /bin/bash env >/tmp/cronjob.log... (1 Reply)

6. UNIX for Dummies Questions & Answers

Hey guys. Hopefully this is an easy one but having reference similar problems on the web I still can't fix it. I am doing a recursive find and replace from a script. Of course I could just run the damn thing from the command line but it's bugging me now and want to get it working. grep -rl... (4 Replies)

7. Windows & DOS: Issues & Discussions

Hi All, This command works when I type it on but when I run the batch file it doesn't..any ideas why? attrib.exe * | find /c /v "" >filecount.txt (1 Reply)

8. Shell Programming and Scripting

I am working with a sh script on a solaris 9 zone (sol 10 host) that grabs information to build the configuration command line. the variables Build64, SSLopt, CONFIGopt, and CC are populated in the script. the script includes CC=`which gcc` CONFIGopt=' --prefix=/ --exec-prefix=/usr... (8 Replies)

9. Shell Programming and Scripting

OSX 10.9 I am building a script that evaluates the difference between 2 files. Here is a command that does not work transparently. Running this command in Terminal yields great results; however when I put that line in a .sh script, I get the errors shown below. Am I doing something silly? ... (1 Reply)

10. Shell Programming and Scripting

The below command moves all the .vcf files into the directory. cp /home/cmccabe/Desktop/test/vcf/overall/stats/*.vcf /home/cmccabe/Desktop/NGS/annovar When I use a bash wrapper the target.txt gets created but the text files do not get copied. All the paths are the same, but not sure why... (2 Replies)