I am trying to extract line number (first number), as well as everything from TSVal onwards.
The following sed regex accomplishes this, but I have a few questions around the expression.
1> Why does [0-9] need to be grouped into brackers?
2> What is the purpose of \1 TSval? If /1 denotes the last element which is remembered, how does it apply here?
Hi,
I am trying to write a shell script designed to take input line by line by line from a file with a word on each line for editing with sed. Example file:
1.ejverything
2.bllown
3.maikling
4.manegement
5.existjing
6.systems
My design currently takes input from the user, and... (2 Replies)
Dear All,
I want to decode the one of the file field.
Input file:
9393939393|999|2009-02-20 00:00:01|2||4587|2007-02-28 00:00:01|0
9393939393|2001|2009-02-20 00:00:01|2||4587|2007-02-28 00:00:01|0
9393939393|1500|2009-02-20 00:00:01|2||4587| 2007-02-28 00:00:01|0... (1 Reply)
Hi All,
I'm trying to extract all the description fields from a MIB file which contain multiple instances of the following text:
ENTERPRISE compaq
VARIABLES { sysName, cpqHoTrapFlags, cpqSsBoxCntlrHwLocation,
cpqSsBoxCntlrIndex, cpqSsBoxBusIndex,... (10 Replies)
Greetings,
I am doing something that I don't know if it is possible...
I have a file with a line looks like this:
<%s \n%s / %s \n%s \n>
and I am trying to replace this line with
<%s \n%s \n%s / %s \n%s \n>
in Shell script with sed command...
StringToReplace='%s \n%s / %s \n%s \n'... (2 Replies)
I need to create a logical test to see if a job is complete.
I have 4 seperate jobs that will be running in tandem and will create a file indicating the job completed. Once all 4 jobs have completed I will need to execute the final job to execute the final task. The problem I am having is that... (5 Replies)
Hi All,
I need your assistance, I would like to replace all lines beginning with the word "begin" with the below text:
Device | IPMB0-A | IPMB0-B
Board Address |Sent SentErr %Errr |Sent SentErr ... (10 Replies)
Hi guys, I need to do a bit of work to a file.
Basically I want to run a SQL statement against each record in this file (hundreds of lines):
sample input:
233333
233334
233335
233336
I want to do the following:
1. Add a some text at the beginning to prepare the SQL (3 lines)
2. Add... (7 Replies)
Here is the error showing in the XCSF, can anyone recommend further diagnosis for this specific error?;
XSCF> showhardconf
SPARC Enterprise M3000;
+ Serial:PX61142029; Operator_Panel_Switch:Locked;
+ Power_Supply_System:Single; SCF-ID:XSCF#0;
+ System_Power:On;... (4 Replies)
Hello there,
I am trying to get my head around the section below of a script we use that incorporates AWK and Regular Expressions.
{ match($0,"The broker*");print $1,$2,$3 ":", substr($0, RSTART,RLENGTH)}
I have a basic understanding of how match works, what I am struggling with is the... (2 Replies)
Hello everyone.
I am trying to replace
sprintf(buffer, "{\"id\":1,\"method\":\"mining.update_block\",\"params\":}\n", coinid, blockhash);
with
sprintf(buffer, "{\"id\":1,\"method\":\"mining.update_block\",\"params\":}\n", coinid, blockhash);
this is the code I was trying but is... (9 Replies)
Discussion started by: crombiecrunch
9 Replies
LEARN ABOUT DEBIAN
bio::seq::seqfastaspeedfactory
Bio::Seq::SeqFastaSpeedFactory(3pm) User Contributed Perl Documentation Bio::Seq::SeqFastaSpeedFactory(3pm)NAME
Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factory
SYNOPSIS
use Bio::Seq::SeqFastaSpeedFactory;
my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
my $seq = $factory->create(-seq => 'WYRAVLC',
-id => 'name');
# If you want the factory to create Bio::Seq objects instead
# of the default Bio::PrimarySeq objects, use the -type parameter:
my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
DESCRIPTION
This object will build Bio::Seq objects generically.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object
Returns : Bio::Seq::SeqFastaSpeedFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates a new Bio::Seq object, correctly built but very
fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
Returns : Bio::Seq
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-id => $name
perl v5.14.2 2012-03-02 Bio::Seq::SeqFastaSpeedFactory(3pm)