Perl to extract values and print at end of each line
In the below perl I am trying to extract and print the values AF1=, the GT value, and F[5] or QUAL diveded by 33 (rounded to the nearest whole #). The GT value is at the end after the GT:PL so all the possibilities are read into a hash h, then depending on the value that is in the line the coresponding het ot hom results. The command does execute but the file is not changed. I know many of the regex in the command are not used but I need to keep the same format (this is a special case scenario). Thank you .
file
perl
desired tab-delimited
Last edited by cmccabe; 05-16-2019 at 04:49 PM..
Reason: fixed format
hi
In the foll example the whole text in a single line....
i want to extract text from IPTel to RTCPBase.h.
want to use this acrooss the whole file
Updated: IPTel\platform\core\include\RTCPBase.h \main\MWS2051_Sablime_Int\1... (7 Replies)
This is the line that I am using:
sed 's/^*\({3}*$\)/\1 /' <test.txt >results.txt
and suppose that test.txt contains the following lines:
http://www.example.com/200904/AUS.txt
http://www.example.com/200903/_RUS.txt
http://www.example.com/200902/.FRA.txt
What I expected to see in results.txt... (6 Replies)
Hi everybody
I have some problems with PERL programming.
I have a file with two columns, both with numeric values.
I have to extract the values > 50 from the 2nd columns and sum them among them.
The I have to sum the respective values in the first column on the same line and, at the end, I... (6 Replies)
The file contains one line of text followed by a number. I want to take the number X at the end, take it out and display the last X words. X is the key telling me how many words from the end that I want and X will always be less than the number of words, so no problem there.
Example input and... (4 Replies)
I am looking help in awk, quick overview. we will get feed from external system . The input file looks like below.
Detail Id Info Id Order Id STATUS Status Date FileDetail
99127942 819718 CMOG223481502 PR 04-17-2011 06:01:34PM... (7 Replies)
Hi,
How to find the end of character in the file.
My requirement should be as below.1 is repeating 1 time ,2 is repeating 3 times...
type 1: 1
type 2: 3
type 3: 2
9f680177|20077337258|0|0|0|1000004647916|1
9f680177|20077337258|0|0|0|1000004647916|2
9f680177 20077337258 0 0 0... (5 Replies)
Hi Guys,
I am stuck in a problem.
I have a variable in Perl script which has value for example
X=a-b-c;
Now, I want to extract a b c separately into different 3 variables. I know this can be done in shell using awk but Perl behaves a bit different.
Can anybody help me on this please?... (3 Replies)
Hi
I have a very large data file with several hundred columns and millions of lines.
The important data is in the last set of columns with variable numbers of tab delimited fields in front of it on each line.
Im currently trying sed to get the data out - I want anything beetween :RES and... (4 Replies)
Hello friends,
I have a text file with many columns (no. columns vary from row to row) separated by space. I need to collect all the values from 18th column to the end from each line and group them as pairs and then numbering like below..
1. 18th-col-value 19th-col-value 2. 20th-col-value ... (5 Replies)