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Full Discussion: Help on passing an input variable to the voronota program (after third pipe)
Top Forums UNIX for Beginners Questions & Answers Help on passing an input variable to the voronota program (after third pipe) Post 303035224 by Aurimas on Thursday 16th of May 2019 03:26:26 PM
Old 05-16-2019
Dear all,

How can I exit the script and return to terminal if domains is not equal to .pdb file, which i specifies . How could I make domains to be equal to "e" or any other string, number, etc. that would mean for the script to exit it and return to terminal?

The upgraded script:
Code:
#!/bin/bash
for i in $( ls ); do
    echo $i
    read -p "Domains: " domains
    cat $i | voronota get-balls-from-atoms-file --annotated | voronota calculate-contacts --annotated | voronota query-contacts --match-first "'c<$domains>'" --match-second 'R<ALA>' | awk '{sum += $3} END {print sum}'
done

I will look forward to your replies.

Sincerely,
Aurimas

--- Post updated at 07:26 PM ---

Solved. No need for help.
Last edited by Aurimas; 05-16-2019 at 04:26 PM..
 

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LEARN ABOUT SUNOS

asadmin-stop-appserv

asadmin-stop-appserv(1AS)					   User Commands					 asadmin-stop-appserv(1AS)

NAME

       asadmin-stop-appserv, stop-appserv - stops the domains inthe specified directory

SYNOPSIS

       stop-appserv [--domaindir install_dir/domains] [--terse=false] [--echo=false]

       This  command  has  been deprecated. Please use stop-domain to stop the domains in the specified or default domains directory. stop-appserv
       stops the domains in the specified or default domains directory. If the domains directory is not specified,  the  domains  in  the  default
       domains directory are stopped. The default domains directory is install_dir/domains. This command can only be run locally.

OPTIONS

       --domaindir	       directory where the domains are stopped. If specified, path must be accessible in the filesystem. If not specified,
			       the domain is stopped in the default install_dir/domains directory.

       --terse		       indicates that any output data must be very concise, typically avoiding human-friendly sentences and favoring well-
			       formatted data for consumption by a script. Default is false.

       --echo		       setting to true will echo the command line statement on the standard output. Default is false.

EXIT STATUS

       0		       command executed successfully

       1		       error in executing the command

       asadmin-create-domain(1AS), asadmin-start-domain(1AS), asadmin-stop-domain(1AS), asadmin-delete-domain(1AS), asadmin-list-domains(1AS)

J2EE 1.4 SDK							    March 2004						 asadmin-stop-appserv(1AS)
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