Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Help on passing an input variable to the voronota program (after third pipe)
Top Forums UNIX for Beginners Questions & Answers Help on passing an input variable to the voronota program (after third pipe) Post 303035224 by Aurimas on Thursday 16th of May 2019 03:26:26 PM
Old 05-16-2019
Dear all,

How can I exit the script and return to terminal if domains is not equal to .pdb file, which i specifies . How could I make domains to be equal to "e" or any other string, number, etc. that would mean for the script to exit it and return to terminal?

The upgraded script:
Code:
#!/bin/bash
for i in $( ls ); do
    echo $i
    read -p "Domains: " domains
    cat $i | voronota get-balls-from-atoms-file --annotated | voronota calculate-contacts --annotated | voronota query-contacts --match-first "'c<$domains>'" --match-second 'R<ALA>' | awk '{sum += $3} END {print sum}'
done

I will look forward to your replies.

Sincerely,
Aurimas

--- Post updated at 07:26 PM ---

Solved. No need for help.
Last edited by Aurimas; 05-16-2019 at 04:26 PM..
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Passing struct through unix pipe -solved

EDIT: Nevermind, called a friend who is good at this stuff and he figured it out :D Hi all, So I'm trying to teach myself to write programs for unix in c. I am currently creating a program, and I need to pass a struct through a pipe, but I can't figure out how. The struct I want to pass... (0 Replies)
Discussion started by: twnsfn34
0 Replies

2. Solaris

sendmail pipe to a program.

Hello, I recently upgraded our server from Solaris 8 to 9. The sendmail is unabled to pipe the email to a perl script. I can send and received email to local and external mail, but the script did not get the email. There is no error in the log and I could not find any thing on the web. Here... (0 Replies)
Discussion started by: ld98
0 Replies

3. Shell Programming and Scripting

Shell variable to c++ program as input

I have an Shell script which has few global variables eg : range=100; echo "$range" I want to use the same variable in my C++ program for example int main() { cout << range << "\n"; } i tried using this int main(int argc, char *argv) { cout << range << "\n"; } but... (5 Replies)
Discussion started by: shashi792
5 Replies

4. Programming

pipe program in C

Hello guys, my professor give me 2 days to study and make a program usign pipe, fork in c i need to do a program read a arq.txt the father process read the file and the child print ! like this #include <stdio.h> #include <stdlib.h> #include <sys/wait.h> int main (){ ... (1 Reply)
Discussion started by: beandj
1 Replies

5. Homework & Coursework Questions

pipe program in C

Hello guys, my professor give me 2 days to study and make a program usign pipe, fork in c i need to do a program read a arq.txt the father process read the file and the child print ! 2. Relevant commands, code, scripts, algorithms: like this Code: #include <stdio.h>... (1 Reply)
Discussion started by: beandj
1 Replies

6. Shell Programming and Scripting

How to use an input pipe ?

Hi all, I would like to use properly an input pipe, like this : cat myFile.txt | myCommand.shI always find this solution : while read line; do ...; donebut I have a great lost of performance ! On a big file, with a simple grep, I can spend 2400 times more time ! oO (from 0,023sec to 1m)... (4 Replies)
Discussion started by: LeNouveau
4 Replies

7. Shell Programming and Scripting

Passing variable as an input file to AWK comand

Hi, I would like to compare 2 files using awk, which I can do by using: awk 'NR==FNR{a;next} (NR > 32 && $2 in a) {print $0}' File1 and File2. If the name of the File1 is in another file (for example, column 4 in File 3) then how can I pass this column 4 to the awk command. Thanks in... (1 Reply)
Discussion started by: ezhil01
1 Replies

8. Shell Programming and Scripting

Passing a variable as input to another shell

I have a shell program that calls another shell program the following code works . chkTimeFormat.sh "10/9/12 17:51:19:783."|read c but when I am passing the the time in a variable like in the code below, the shell chkTimeFormat.sh is not returning proper value time="10/9/12... (9 Replies)
Discussion started by: swayam123
9 Replies

9. UNIX for Advanced & Expert Users

Passing variable as input & storing output in other variable

I have a below syntax its working fine... var12=$(ps -ef | grep apache | awk '{print $2,$4}') Im getting expected output as below: printf "%b\n" "${VAR12}" dell 123 dell 456 dell 457 Now I wrote a while loop.. the output of VAR12 should be passed as input parameters to while loop and results... (5 Replies)
Discussion started by: sam@sam
5 Replies

10. Shell Programming and Scripting

While read pipe input issue

Hello, I have an ffmpeg bash script which is working nice and I need to do the same for other sources. To create new scripts and to deal with multiple bash files sounds not logical. It is a bit hard to manage for me.. I wondered if it was possible to make my input file as variable. Then I... (1 Reply)
Discussion started by: baris35
1 Replies

LEARN ABOUT OSF1

jdbreg

jdbreg(8)						      System Manager's Manual							 jdbreg(8)

NAME

       jdbreg - Registers hosts in the DHCP dynamic databases.

SYNOPSIS

       /usr/sbin/jdbreg [-d] [-e] [-f character] [-s] [-l  | -n] [-o] [-w] filename...

OPTIONS

       Deletes the records whose keys are implied by the input file(s).  Uses character as the field separator.  The default is the pipe | charac-
       ter.  Display all currently registered hosts.

DESCRIPTION

       The jdbreg program registers (or removes) hosts for configuration by DHCP.  When the registered_hosts_only policy is in effect, the  server
       configure only clients whose MAC addresses are so registered. When this policy is not in effect, registering hosts has no effect.

       Each  record  to  be loaded is terminated by a newline, and the fields within each record delimited by default with the pipe (|) character,
       although this may be changed with the -f command line option.

       The fields within the data file(s) to be loaded are as follows: MAC address MAC address type MAC address length (octets)

RESTRICTIONS

       Because the database used by join does not support multiuser concurrently, applications that write to it, lock the entire  database.   This
       means that you cannot use jdbreg while joind is running. The converse is also true.

FILES

SEE ALSO

       Commands: joind(8)

																	 jdbreg(8)
All times are GMT -4. The time now is 05:31 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy