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Full Discussion: Help on passing an input variable to the voronota program (after third pipe)
Top Forums UNIX for Beginners Questions & Answers Help on passing an input variable to the voronota program (after third pipe) Post 303035224 by Aurimas on Thursday 16th of May 2019 03:26:26 PM
Old 05-16-2019
Dear all,

How can I exit the script and return to terminal if domains is not equal to .pdb file, which i specifies . How could I make domains to be equal to "e" or any other string, number, etc. that would mean for the script to exit it and return to terminal?

The upgraded script:
Code:
#!/bin/bash
for i in $( ls ); do
    echo $i
    read -p "Domains: " domains
    cat $i | voronota get-balls-from-atoms-file --annotated | voronota calculate-contacts --annotated | voronota query-contacts --match-first "'c<$domains>'" --match-second 'R<ALA>' | awk '{sum += $3} END {print sum}'
done

I will look forward to your replies.

Sincerely,
Aurimas

--- Post updated at 07:26 PM ---

Solved. No need for help.
Last edited by Aurimas; 05-16-2019 at 04:26 PM..
 

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LEARN ABOUT PLAN9

asadmin-list-domains

asadmin-list-domains(1AS)					   User Commands					 asadmin-list-domains(1AS)

NAME

       asadmin-list-domains, list-domains - lists the domains in the given domains directory

SYNOPSIS

       list-domains [--domaindir install_dir/domains] [--terse=false] [--echo=false]

       list-domains lists the domains in the given domains directory. This command is supported in local mode only.

OPTIONS

       --domaindir	       directory where the domains are located. If specified, path must be accessible in the filesystem. If not specified,
			       the domains in the default install_dir/domains directory are listed.

       --terse		       indicates that any output data must be very concise, typically avoiding human-friendly sentences and favoring well-
			       formatted data for consumption by a script.

       --echo		       setting to true will echo the command line statement on the standard output.

       Example 1: Using list-domains

       asadmin> list-domains
       List of domains:
       domain1 running
       samples not running

       Where: the domain1 and samples are listed and their status printed.

EXIT STATUS

       0		       command executed successfully

       1		       error in executing the command

       asadmin-create-domain(1AS), asadmin-delete-domain(1AS), asadmin-start-domain(1AS), asadmin-stop-domain(1AS)

J2EE 1.4 SDK							    March 2004						 asadmin-list-domains(1AS)
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