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Full Discussion: Help on passing an input variable to the voronota program (after third pipe)
Top Forums UNIX for Beginners Questions & Answers Help on passing an input variable to the voronota program (after third pipe) Post 303035201 by Aurimas on Thursday 16th of May 2019 11:33:38 AM
Old 05-16-2019
Help on passing an input variable to the voronota program (after third pipe)
Dear UNIX forum members,

I am using macbook pro 13 (2015 edition) with MAC OS Mojave and am trying to write the shell script where when it is run through terminal it asks for an input (in the code below an input variable is domains) and then that input becomes capital letter or letters which voronota program requires (so instead of 'c<domains>' it should be 'c<C,D>' or any other letter combinations when the voronota program is run at the third pipe). The code is given below :

Code:
#!/bin/bash
for i in $( ls ); do
    echo $i
    read -p "Domains: " domains
    cat $i | voronota get-balls-from-atoms-file --annotated | voronota calculate-contacts --annotated | voronota query-contacts --match-first 'c<$domains>' --match-second 'R<ALA>' | awk '{sum += $3} END {print sum}'
done

I am expecting to get 1.18715 after awk prints the value to the terminal, but in the above code I do not get any value which signals to me that when I write C,D after shell asks "Domains: " the written input is not passed to the variable domain at:

Code:
... | voronota query-contacts --match-first 'c<$domains>' --match-second 'R<ALA>' ...

I will look forward to your help.

Sincerely,
Aurimas

P.S. I tried writing "$domains" but still no success
Last edited by Aurimas; 05-16-2019 at 12:44 PM..
 

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LEARN ABOUT PLAN9

asadmin-start-appserv

asadmin-start-appserv(1AS)					   User Commands					asadmin-start-appserv(1AS)

NAME

       asadmin-start-appserv, start-appserv - starts thedomains in the specified or default domains directory

SYNOPSIS

       start-appserv [--domaindir install_dir/domains] [--terse=false] [--echo=false]

DESCRIPTION

       This command has been deprecated. Please use start-domain to start the domains in the specified or default domains directory. start-appserv
       starts the domains in the specified or default domains direcotry. If the domains directory is not specified, the  domains  in  the  default
       domains directory are started. The default domains directory is install_dir/domains. This command can only be run locally.

OPTIONS

       --domaindir	       directory where the domains are started. If specified, path must be accessible in the filesystem. If not specified,
			       the domains are started in the default install_dir/domains directory.

       --terse		       indicates that any output data must be very concise, typically avoiding human-friendly sentences and favoring well-
			       formatted data for consumption by a script. Default is false.

       --echo		       setting to true will echo the command line statement on the standard output. Default is false.

EXIT STATUS

       0		       command executed successfully

       1		       error in executing the command

       asadmin-create-domain(1AS), asadmin-start-domain(1AS), asadmin-stop-domain(1AS), asadmin-delete-domain(1AS), asadmin-list-domains(1AS)

J2EE 1.4 SDK							    March 2004						asadmin-start-appserv(1AS)
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