Sponsored Content
Top Forums UNIX for Beginners Questions & Answers awk to add +1 to value based on condition in input Post 303035089 by cmccabe on Tuesday 14th of May 2019 01:37:03 PM
Old 05-14-2019
awk to add +1 to value based on condition in input

In the awk below I am trying to add a | that will adjust $2 in the ouput by adding +1 if the original value from file that was used in $3 had a - in it. Line 3 of file is an example of this. In my current awk I just subtract one but I am not sure how to only apply this to those values without a -. In my actual data there may be hundreds of lines but always the same format. Thank you Smilie.


file
Code:
2019 NGS-A Gene and Chromosomal Position List,,,,
Gene Symbol,HGNC ID,Transcript Number,Chromosomal Position/Interval ,Required (Exome and Genome Labs)
VPS13B,HGNC:2183,NM_017890.4,chr8 100493900-100493909,yes
VPS33B,HGNC:12712,NM_018668.4,chr15 91543131,

current
Code:
chr8	100493899	100493909	VPS13B
chr15	91543130	91543131	VPS33B

desired
Code:
chr8	100493900	100493909	VPS13B
chr15	91543130	91543131	VPS33B

awk
Code:
awk -F, 'FNR > 2 {for(i=1;i<=NF;i++){if($i~/^chr/){a=$i}} print a,$1}' file | awk -F'[ :-]' 'NF==3{$4=$3;$3=$2} {$1=$1} 1' OFS='\t' | awk -F'\t' '{print $1,$2-1,$3,$4}' OFS="\t" out

 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

awk script to split a file based on the condition

I have the file with the records like 4234234 US phone 3244234 US cup 2342342 CA phone 8947234 US phone 2389472 CA cup 2348972 US maps 3894234 CA phone I want the records with (US,phone) as record to be in one file, (Us, cup) in another file and (CA,cup) to be in another I mean all... (12 Replies)
Discussion started by: superprogrammer
12 Replies

2. Shell Programming and Scripting

Awk to print on condition in input file

I need only those records which has $2 equal to "DEF" independent of case (i.e upper or lower) nawk -F"," '$2 ~ //{print $0}' file This returns 3rd record also which i dont want I tried this but this doesnt work as expected. nawk -F"," '$2 == ""{print $0}' file i dont... (3 Replies)
Discussion started by: pinnacle
3 Replies

3. Shell Programming and Scripting

Copy input file based on condition

Hi, I am new to unix shell programming. I want to write a shell script for a functionality existing in mainframe system. I have one file as below as input 123456 &__987 &12yuq abcdef _ referes to blank condition:whenever the input file is having &__ ,it should be replaced... (4 Replies)
Discussion started by: charan0703
4 Replies

4. Shell Programming and Scripting

Change in Input feed based on condition file

Sorry Guys for not being able to explain in one of my earlier post. I am now putting my requirement with the input file and desired output file. In the below input file - Transaction code is at position 31:40. Business code is from position 318:321 TSCM00000005837 ... (7 Replies)
Discussion started by: varunrbs
7 Replies

5. Shell Programming and Scripting

Move input file based on condition

Hello, I have File1 in a directory A, a File2 in a directory B. If the File2 is not empty Then I have to move File1 from directory A to a directory archive Else no action. Is it possible to do this from one command line? Thank you in advance for your answers. Madi (2 Replies)
Discussion started by: AngelMady
2 Replies

6. Shell Programming and Scripting

Help with Awk finding and replacing a field based on a condition

Hi everybody, I'm trying to replace the $98 field with "T" if the last field (108th) is T I've tried awk 'BEGIN{OFS=FS="|"} {if ($108=="T")sub($98,"T"); print}' test.txt but that doesn't do anything also tried awk 'BEGIN{OFS=FS="|"}{ /*T.$/ sub($98,"T")} { print}' test.txt but... (2 Replies)
Discussion started by: jghi123
2 Replies

7. Shell Programming and Scripting

Remove line based on condition in awk

In the following tab-delimited input, I am checking $7 for the keyword intronic. If that keyword is found then $2 is split by the . in each line and if the string after the digits or the +/- is >10, then that line is deleted. This will always be the case for intronic. If $7 is exonic then nothing... (10 Replies)
Discussion started by: cmccabe
10 Replies

8. Shell Programming and Scripting

Help with awk color codes based on condition

HI i have two files say test and test1 Test.txt Code: Lun01 2TB 1.99TB 99.6% Lun02 2TB 1.99TB 99.5% Lun03 2TB 1.99TB 99.5% Lun04 2TB 1.55TB 89.6% Code: Test1.txt Lun01 2TB 1.99TB 89.5% Lun02 2TB 1.99TB 99.5% Lun03 2TB 1.99TB 99.5% Requirement is to compare... (6 Replies)
Discussion started by: venkitesh
6 Replies

9. Shell Programming and Scripting

awk to reformat lines based on condition

The awk below uses the tab-delimeted fileand reformats each line based on one of three conditions (rules). The 3 rules are for deletion (lines in blue), snv (line in red), and insertion (lines in green). I have included all possible combinations of lines from my actual data, which is very large.... (0 Replies)
Discussion started by: cmccabe
0 Replies

10. Shell Programming and Scripting

Add new column based in condition

At begining of column 2 the same block (2000) have 3 lines, in the next block (2336) it have 9 lines and for block (2524) 3 lines. ... (0 Replies)
Discussion started by: jiam912
0 Replies
Locale::Codes::LangVar(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangVar(3pm)

NAME
Locale::Codes::LangVar - standard codes for language variation identification SYNOPSIS
use Locale::Codes::LangVar; $lvar = code2langvar('acm'); # $lvar gets 'Mesopotamian Arabic' $code = langvar2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langvar_codes(); @names = all_langvar_names(); DESCRIPTION
The "Locale::Codes::LangVar" module provides access to standard codes used for identifying language variations, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language variations. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lvar = code2langvar('en','alpha-2'); $lvar = code2langvar('en',LOCALE_CODE_ALPHA_2); The codesets currently supported are: alpha This is the set of alphanumeric codes from the IANA language registry, such as 'arevela' for Eastern Armenian. This code set is identified with the symbol "LOCALE_LANGVAR_ALPHA". This is the default code set. ROUTINES
code2langvar ( CODE [,CODESET] ) langvar2code ( NAME [,CODESET] ) langvar_code2code ( CODE ,CODESET ,CODESET2 ) all_langvar_codes ( [CODESET] ) all_langvar_names ( [CODESET] ) Locale::Codes::LangVar::rename_langvar ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangVar::add_langvar ( CODE ,NAME [,CODESET] ) Locale::Codes::LangVar::delete_langvar ( CODE [,CODESET] ) Locale::Codes::LangVar::add_langvar_alias ( NAME ,NEW_NAME ) Locale::Codes::LangVar::delete_langvar_alias ( NAME ) Locale::Codes::LangVar::rename_langvar_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangVar::add_langvar_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangVar::delete_langvar_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2014-01-06 Locale::Codes::LangVar(3pm)
All times are GMT -4. The time now is 12:53 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy