I have learned file comparison from my previous post here. Then, it is comparing the whole line. Now, i have a new problem.
I have two files with 3 columns separated with a "|". What i want to do is to compare the second and third column of file 1, and the second and third column of file 2. And... (4 Replies)
Hi All,
I've got a file like this:
a 1 0 0 0 1 0 0 1 1 3 3 1 4 4 4
b 1 0 0 0 1 4 4 1 3 1 1 4 4 2 2
c 1 0 0 0 2 0 0 3 3 1 3 1 1 2 4
d 1 0 0 0 2 0 0 1 1 0 0 4 4 2 4
The file has ~4200 entries. I need to exclude those columns that are zeros for all those rows that have 2 in column 6. For... (0 Replies)
Hello Friends,
Hope you are doing well.
I am writing a shell script to find out the log file which are not updated in last 1 hours. I've almost completed the script but need your help in formatting its outputs.
Currently, the output of the script is like this(as a flat row):
... (3 Replies)
hi! i researched about comparing two columns here and got an answer. but after examining my two files, i found out that the first columns of the two files are not unique with each other. all i want to compare is the 2nd and 3rd column.
FILE 1:
ABS 456 315
EBS 923 163
JYQ3 654 237
FILE 2:... (1 Reply)
Hey guys
I have got a tab-separated file and I want to copy only selected records from two columns at a time satisfying specified condition, and create a new file.
My tab separated file is like this
ID score ID score ID Score ID score ID score
1_11 0.80 2_23 0.74 2.36 0.78 2_34 0.75
A_34... (9 Replies)
Can I transform input like the below ?
Note: Insert zeros if there is no value to transform.
Input
key name score
key1 abc 10
key2 abc 20
key1 xxx 100
key2 xxx 20
key1 zzz 0
key2 zzz 29
key3 zzz 129
key1 yyy 39output
abc ... (1 Reply)
a,b,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,aa,bb,cc,dd,ee,ff,gg,hh,ii
a thru ii are digits and strings....
The awk needed....if coloumn 9 == i (coloumn 9 is string ), output the sum of x's(coloumn 22 ) in all records and sum of y's (coloumn 23 ) in all records in a file (records.txt).... (6 Replies)
The purpose is to check if values for column 3 and 4 in file1 match with column 1 in file2.
If any value match do:
1) Replace values in file2 for column 2 and 3 using the information of file1 columns 5 and 6
2) Replace string ($1,1,5) and string ($1,6,5) in file2 with values of columns 7... (8 Replies)
Discussion started by: jiam912
8 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)
04-06-2019
