What operating system are you using for this exercise?
It seems that the text description of your problem says that everything you need to find the files to be moved and the locations to which they should be moved is found in a file named /home/cmccabe/f1/file, but your script is treating that regular file as a directory. What am I missing?
Furthermore, you go to a lot of work to create a variable named VCF which contains the name of a file after stripping off the .vcf filename extension. But when you start moving the .vcf files, you use $VCF as the name of those files without reinstating the filename extension???
I then got completely lost when you started a loop on all of the R_2019* files in $DIR. Note that the DIR variable is never defined in your script and is never mentioned in your description of what you are trying to do.
I'm having a hard time guessing at what files are being processed by the code:
(which should have "$f" instead of $f). I'm guessing that this will set FILE2 to a list of filenames that you are then treating as a single filename; but since I don't know what the contents are of the file that has been selected by $f; I'm lost.
I'm assuming that you have tried running your script and it is failing to work. What diagnostics is it printing, or if there aren't any, in what way is it failing to do what you want it to do?
Please indent your code to show its structure. Then comments like "end if" and "end loop" won't be needed and we won't have to wonder where the start of the "if" and "loop" are located. I know the shell doesn't care about indentation, but you are a human and you're asking humans on this forum to read your code. Lack of indentation makes it make difficult for humans (including you) to understand what your code is trying to do.
These 2 Users Gave Thanks to Don Cragun For This Post:
My input:
File_1:
2000_t
g1110.b1
abb.1
2001_t
g1111.b1
abb.2
abb.2
g1112.b1
abb.3
2002_t
.
.
File_2:
2000_t Ali england 135
abb.1 Zoe british 150
2001_t Ali england 305
g1111.b1 Lucy russia 126 (6 Replies)
Hi all,
This is actually more for my lazyness then anything else, but I think others might find it useful to use as well. Basically this is what I am trying to achieve...
In my ubuntu home dir under Downloads is where firefox saves everything by default, now I know that you can manually... (3 Replies)
Move all files starting with a specific name to different directory.
This shell script program should have three parameters
File Name
Source Directory
Destination Directory
User should be able to enter ‘AB_CD*' in file name parameter. In this case all the files starting with AB_CD will... (1 Reply)
Hi Folks,
I have different type of file in my current directory. From my current directory i need to move the file which is start with csp_rules and if the file is having the string payg , then I need to move all this files to another directory /output/record. Please help me how to do this?
... (3 Replies)
Hi All,
Really stuck up with a requirement where I need to move a file (Lets say date_Employee.txt--the date will have different date values like 20120612/20120613 etc) from one directory to another based on creation/modification dates.
While visiting couple of posts, i could see we can... (3 Replies)
Hi all,
I'm new to this forum and bash scripting. I have the following problem, I need to copy some files (from one dir. to another) whose first 5 numbers (subjects' ID) match the directory names. Here a shortened version of what I'm trying to do:
names=(32983_f 35416_f 43579_f) # these are... (6 Replies)
I am using bash to prompt a user for a choice using: where a "y" response opens a menu with available panels that can be used.
while true; do
read -p "Do you want to get coverage of a specific panel?" yn
case $yn in
* ) menu; break;;
* ) exit;;
* ) echo... (6 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
I have a directory /home/cmccabe/nfs/exportedReports that contains multiple folders in it. The find writes the name of each folder to out.txt. A new directory is then created in a new location /home/cmccabe/Desktop/NGS/API, named with the date. What I am trying to do, unsuccessfully at the moment,... (7 Replies)
In the below bash I am trying to rename eachof the 3 text files in /home/cmccabe/Desktop/percent by matching the numerical portion of each file to lines 3,4, or 5 in /home/cmccabe/Desktop/analysis.txt. There will always be a match between the files. When a match is found each text file in... (2 Replies)