I modified the find and added a loop to mkdir and got the expected results. Just wanted to share in case it helps anyone else in the future. Thank you .
Code:
DIR=/home/cmccabe/Desktop/sub ## define data directory path
for RDIR in "$DIR"/R_2019* ; do ## start processing matching "R_2019*" to operate on desired directory and expand
cd "$RDIR"/BAM ## change directory to subfolder inside $RDIR
i=$(find . -type f -name "*.bam" -print | while read f;do echo "$f" | cut -d_ -f2-;done| cut -f 1 -d '.') # extract .bam
for x in $i
do mkdir -p $RDIR/$x
done
done ## close loop
Hi, I need some help to see if I this is posible with a while loop. I need to run a script once a day that will take all of the *.TXT files in a folder and rename them to a specific file name structure with a .dat extension. I wrote this script, but I get an error that says " line 3: too many... (2 Replies)
Interpreter should be bash.
1. The problem statement, all variables and given/known data:
I need to make a file (myText.txt or song.mp3 or cloud.tar.gz or whatever) and then change the extension to (myText.TXT , song.MP3, cloud.TAR.GZ).
It would be good if I can add all information in... (4 Replies)
for x in `find /vmfs/volumes/v01tstn01a01/ -type d`; do find $x -name '*.vmx' > /dev/null || echo $x; done;
The goal of this is to find the subdirectories that do NOT contain a file with the extension of .vmx
Any help would be great! (6 Replies)
unix program to which a directory name will be passed as
parameter. This directory will contain files with various
extensions. This script will create directories with the names of the
extention of the files and then put the files in the
corresponding folder. All files which do not have any... (2 Replies)
hello,
i have the below while loop wherein i am passig list of filenames to be scped. this is in unix ksh -
filenamelist.txt has list of files names, including .dat and .txt files
but i want to pass only the .txt filenames to the while loop so that only .txt files gets scped.
how can... (4 Replies)
What's the command syntax for stripping out the tar.gz file extension in a bash command line (not script file). Thanks!
prompt/> ls *.tar.gz | <what comes here?> (3 Replies)
hi everyone,
I just began to be interested about the bash access.
I buy a time ago a Raspberry pi, I installed raspbmc and now I would like build a bash to copy everyday all new files inside my server directly on the hard drive in my Pi.
So my HDD is directly plug on my pi with usb connect,... (4 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
I am trying to use bash to automate the scan of a specific directory using clamav. Having this in place is a network requirement. The below is an attempt to:
1. count the extensions (.txt, .jpeg) in a directory and write them to a virus-scan.log (section in bold)
2. scan each folder in the... (6 Replies)
The bash below executes and does find all the .bam files in each R_2019 folder. However set -x shows that the .bam extension only gets removed from one .bam file in each folder (appears to be the last in each). Why is it not removing the extension from each (this is $SAMPLE)? Thank you :).
set... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT OSX
createhomedir
createhomedir(1) BSD General Commands Manual createhomedir(1)NAME
createhomedir -- create and populate home directories on the local computer.
SYNOPSIS
createhomedir [-scbalh] [-n directoryDomainName] [-u username]
DESCRIPTION
createhomedir provides several options for creating and populating home directories.
OPTIONS -s creates home directories for server home paths only (default).
-c creates home directories for local home paths only.
-b creates home directories for both server and local home paths.
-a creates home directories for users defined in all directory domains of the server's search path.
-l creates home directories for users defined in the local directory domain.
-n directoryDomainName
creates home directories for users defined in a specific directory domain in the server's search path.
-u username
creates a home directory for a specific user defined in the domain(s) identified in the -a, -l, or -n parameter. If you omit the -a,
-l, and -n parameters when you use the -u parameter, -a is assumed.
-i reads username list from standard input and creates specified home directories. Each username should be on its own line.
-h usage help.
FILES
/usr/sbin/createhomedir location of tool
CAVEATS
When using the -a option, search limits of various directory servers (such as Open Directory or Active Directory) can prevent all possible
home directories from being created. In this case, you may need to specify the usernames explicitly.
Mac OS X June 1, 2019 Mac OS X
03-20-2019
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