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Top Forums Shell Programming and Scripting Attach filename to wc results on massive number of files Post 303032280 by Don Cragun on Thursday 14th of March 2019 02:31:02 PM
Old 03-14-2019
How about something more like:
Code:
LIST1=/what/ever/you/want
OUTPUT1=raw_reads_count.table1

while read -r f
do	(	linecount=$(zcat ${f}_R1.fq.gz | wc -l)
		printf '%s\t%s\n' "$f" "$linecount" >> "$OUTPUT1"
	)&
done < "$LIST1"
wait
printf '%s: %s is ready.\n' "${0##*/}" "$OUTPUT1"

This User Gave Thanks to Don Cragun For This Post:
 

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FILE_EXISTS(3)								 1							    FILE_EXISTS(3)

file_exists - Checks whether a file or directory exists

SYNOPSIS
bool file_exists (string $filename) DESCRIPTION
Checks whether a file or directory exists. PARAMETERS
o $filename - Path to the file or directory. On windows, use //computername/share/filename or \computernamesharefilename to check files on network shares. RETURN VALUES
Returns TRUE if the file or directory specified by $filename exists; FALSE otherwise. Note This function will return FALSE for symlinks pointing to non-existing files. Warning This function returns FALSE for files inaccessible due to safe mode restrictions. However these files still can be included if they are located in safe_mode_include_dir. Note The check is done using the real UID/GID instead of the effective one. Note Because PHP's integer type is signed and many platforms use 32bit integers, some filesystem functions may return unexpected results for files which are larger than 2GB. EXAMPLES
Example #1 Testing whether a file exists <?php $filename = '/path/to/foo.txt'; if (file_exists($filename)) { echo "The file $filename exists"; } else { echo "The file $filename does not exist"; } ?> ERRORS
/EXCEPTIONS Upon failure, an E_WARNING is emitted. NOTES
Note The results of this function are cached. See clearstatcache(3) for more details. Tip As of PHP 5.0.0, this function can also be used with some URL wrappers. Refer to "Supported Protocols and Wrappers" to determine which wrappers support stat(3) family of functionality. SEE ALSO
is_readable(3), is_writable(3), is_file(3), file(3). PHP Documentation Group FILE_EXISTS(3)
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