Hi All,
I have a ',' delimited file and i would like concatenate a new value at a specific column.
Example :-
xXXX,XYZ,20071005,ABC,DEF,123
xXXX,XYZ,20071005,ABC,DEF,123
xXXX,XYZ,20071005,ABC,DEF,123
The output that i want is
xXXX,XYZ,20071005001,ABC,DEF,123... (7 Replies)
hi
My requirement is i have a file with some records like this
file name ::xyz
a=1
b=100,200
,300,400
,500,600
c=700,800
d=900
i want to change my file
a=1
b=100,200,300,400
c=700,800
d=900
if record starts with " , " that line should fallows the previous line.please give... (6 Replies)
Hi, all.
I need to convert a file tab delimited/variable length file in AIX to a fixed lenght file delimited by spaces. This is the input file:
10200002<tab>US$ COM<tab>16/12/2008<tab>2,3775<tab>2,3783
19300978<tab>EURO<tab>16/12/2008<tab>3,28523<tab>3,28657
And this is the expected... (2 Replies)
I want o add a variable in addition to a file which will be send with sendmail. I have problems to find the correct syntax for concatenating this variable called $MyVariable.
sendmail mai@domain.com </tmp/errormessage.txt $MyVariable]
Thanks for your help! (2 Replies)
I have a peculiar file with record format like given below. Each line is wrapped to next lines after certain number of characters. I want to concatenate all wrapped lines into 1.
Input:(wrapped after 10 columns)
This is li
ne1
This is li
ne2 and
this line
is too lo
ng
Shortline
... (8 Replies)
Hello Everyone,
I am stuck with one issue while working on abstract flat file which i have to use as input and load data to table.
Input Data-
------ ------------------------ ---- -----------------
WFI001 Xxxxxx Control Work Item A Number of Records
------ ------------------------... (5 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
I have 3 files
File1
C1 C2 c3
File 2
C1 c2 c3
File 3
C1 c2 c3
Now i want to have
File1 as C1 c2 c3 I
File2 as C1 c2 c3 O
File3 as c1 c2 c3 D
and these 3 files should be concatenated into a single file
how can it be done in unix script? (3 Replies)
Hi there, shameful Linux Newbie here :p
I was wondering if you could help with my problem...
I have plenty of files I'd like to concatenate. I know how to basically use cat command but that won't be enough from what I need : excluding the last xx bytes from files before assembling since there's... (4 Replies)
Discussion started by: grolido
4 Replies
LEARN ABOUT DEBIAN
bio::map::positionwithsequence
Bio::Map::PositionWithSequence(3pm) User Contributed Perl Documentation Bio::Map::PositionWithSequence(3pm)NAME
Bio::Map::PositionWithSequence - A position with a sequence.
SYNOPSIS
use Bio::Map::PositionWithSequence;
my $pos = Bio::Map::PositionWithSequence->new(-map => $map,
-element => $element,
-start => 0,
-seq => 'ATGC');
DESCRIPTION
Have a position with a sequence, eg. define what the binding site sequence of a certain transcription factor binding site is by modelling
it as one of these objects with the -element assigned to a Bio::Map::TranscriptionFactor instance.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Sendu Bala
Email bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Map::PositionWithSequence->new();
Function: Builds a new Bio::Map::PositionWithSequence object
Returns : Bio::Map::PositionWithSequence
Args : -map => Bio::Map::GeneMap object
-element => Bio::Map::Gene object
-relative => Bio::Map::GeneRelative object
-seq => string, length of this string will set the length
of this position's range
* If this position has no range, or if a single value can describe
the range *
-value => scalar : something that describes the single
point position or range of this
Position, most likely an int
* Or if this position has a range, at least two of *
-start => int : value of the start co-ordinate
-end => int : value of the end co-ordinate
-length => int : length of the range
seq
Title : seq
Usage : my $string = $obj->seq();
Function: Get/set the sequence as a string of letters.
Returns : scalar
Args : Optionally on set the new value (a string). An optional second
argument presets the alphabet (otherwise it will be guessed).
perl v5.14.2 2012-03-02 Bio::Map::PositionWithSequence(3pm)