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Full Discussion: How to sum value of a column by range defined in another file awk?
Top Forums UNIX for Beginners Questions & Answers How to sum value of a column by range defined in another file awk? Post 303031536 by yifangt on Friday 1st of March 2019 02:57:57 PM
Old 03-01-2019
What overlapping problem? Using column 3, those do not overlap. Are we intended to count column 2 as well?
What I meant "overlapping" was for the range, for example:

this line N1 48 181 2 could overlap with two ranges:
Code:
N1   0    99   ?
N1 100   199   ?

so I just ignore columns 3 (181) and categorize it to range N1 0 99.
Are all of them N1?
No, N1 means chromosome N1, so that there are 50 different strings, N1, N19, Scaff01 ... Sorry, I should provide a better sample with at least two chromosomes.
Code:
file1.table
N1    0    48    0
N1    48    181    2
N1    181    193    0
N1    193    326    2
N1    326    457    0
N1    457    471    1
N1    471    590    2
N1    590    604    1
N1    604    752    0
N1    752    875    1
N2    0    580    0
N2    580    592    1
N2    592    713    2
N2    568    627    1
N2    627    698    2
N2    698    701    3
N2    701    717    2
N2    713    724    1
N2    717    726    3

Code:
file2.range
chr start end 
N1      0     99   
N1    100    199 
N1    200    299
N1    300    399 
N1    400    499 
N1    500    599 
N1    600    699 
N1    700    799 
N1    800    899 
N1    900    999
N2      0     99 
N2    100    199 
N2    200    299 
N2    300    399 
N2    400    499 
N2    500    599 
N2    600    699 
N2    700    799 
N2    800    899 
N2    900    999

And output:
Code:
chr start end  count 
N1      0     99    3 
N1    100    199    2 
N1    200    299    0 
N1    300    399    0 
N1    400    499    3 
N1    500    599    1 
N1    600    699    1 
N1    700    799    0 
N1    800    899    0 
N1    900    999    0
N2      0     99    0 
N2    100    199    0 
N2    200    299    0 
N2    300    399    0 
N2    400    499    0 
N2    500    599    3 
N2    600    699    5 
N2    700    799    6 
N2    800    899    0 
N2    900    999    0

Last edited by yifangt; 03-01-2019 at 04:13 PM.. Reason: typo and markdown change
 

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NAME

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																	 machid(1)
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