What overlapping problem? Using column 3, those do not overlap. Are we intended to count column 2 as well?
What I meant "overlapping" was for the range, for example:
this line N1 48 181 2 could overlap with two ranges:
so I just ignore columns 3 (181) and categorize it to range N1 0 99. Are all of them N1?
No, N1 means chromosome N1, so that there are 50 different strings, N1, N19, Scaff01 ... Sorry, I should provide a better sample with at least two chromosomes.
And output:
Last edited by yifangt; 03-01-2019 at 04:13 PM..
Reason: typo and markdown change
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