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Top Forums Shell Programming and Scripting awk to retain header lines in output Post 303031404 by nezabudka on Thursday 28th of February 2019 01:18:57 AM
Old 02-28-2019
Hi cmccabe,
If you take as a field separator [\t;], then the lines will be separated in different ways
fifth string:
chr1 11174383 COSM1161896 A G 264.674 PASS AF=0
seventh string:
chr1 43814978 COSM1342796;COSM86963 A G 231.262 PASS AF=0.05
And the first parameter for comparison (AF=0) will be located in different fields. In the first case, in field 8, and in the second, in field 9
due to the fact that in the last line there appears an additional separator (;) marked in red.
With the second parameter for comparison is similar
 

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COLORGCCRC(5)							File Formats Manual						     COLORGCCRC(5)

NAME
colorgccrc - configuration file for colorgcc DESCRIPTION
A colorgccrc configuration file is used to configure the highlighting of the compiler output from colorgcc. SYNTAX
Each line consists of a keyword designating a configuration variable. The keyword is followed by `:' and then one or several values (depending on the keyword). Lines beginning with a hash mark `#' are comments. CONFIGURATION VARIABLES
g++ | gcc | c++ | cc | g77 | gcj | gnat | gpc Specifies the paths to the compilers. Takes one value; a path to the compiler. nocolor Specifies what terminal types colorization should be disabled on. Takes one or several values, separated by whitespace. srcColor Specifies the highlighting attributes source-code should be given. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. introColor Specifies the highlighting attributes for normal compiler output. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningFileNameColor | errorFileNameColor Specifies the highlighting attributes for the filename in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningNumberColor | errorNumberColor Specifies the highlighting attributes for the line-number in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. warningMessageColor | errorMessageColor Specifies the highlighting attributes for the message-text in a warning or an error, respectively. Takes one or several color attributes. See the section COLOR ATTRIBUTES for more information. COLOR ATTRIBUTES
The following attributes are valid for highlighting. clear, reset bold, underline, underscore, blink, reverse, concealed black, red, green, yellow, blue, magenta, cyan, white on_black, on_red, on_green, on_yellow, on_blue, on_magenta, on_cyan, on_white SEE ALSO
gcc(1), colorgcc(1) HISTORY
Jan 15 2003: Initial version of this manual-page. REPORTING BUGS
Report bugs to <jmoyers@geeks.com> AUTHORS
Jamie Moyers <jmoyers@geeks.com> is the author of colorgcc. This manual page was written by Joe Wreschnig <piman@sacredchao.net>, and modified by David Weinehall <tao@debian.org>, for the Debian GNU/Linux system (but may be used by others). COPYRIGHT
Copyright (C) 2003 Jamie Moyers This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU- LAR PURPOSE. Jan 15, 2003 COLORGCCRC(5)
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