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Top Forums Shell Programming and Scripting awk to retain header lines in output Post 303031404 by nezabudka on Thursday 28th of February 2019 01:18:57 AM
Old 02-28-2019
Hi cmccabe,
If you take as a field separator [\t;], then the lines will be separated in different ways
fifth string:
chr1 11174383 COSM1161896 A G 264.674 PASS AF=0
seventh string:
chr1 43814978 COSM1342796;COSM86963 A G 231.262 PASS AF=0.05
And the first parameter for comparison (AF=0) will be located in different fields. In the first case, in field 8, and in the second, in field 9
due to the fact that in the last line there appears an additional separator (;) marked in red.
With the second parameter for comparison is similar
 

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AMPLOT(8)						  System Administration Commands						 AMPLOT(8)

NAME
amplot - visualize the behavior of Amanda SYNOPSIS
amplot [-b] [-c] [-e] [-g] [-l] [-p] [-t T] amdump_files DESCRIPTION
Amplot reads an amdump output file that Amanda generates each run (e.g. amdump.1) and translates the information into a picture format that may be used to determine how your installation is doing and if any parameters need to be changed. Amplot also prints out amdump lines that it either does not understand or knows to be warning or error lines and a summary of the start, end and total time for each backup image. Amplot is a shell script that executes an awk program (amplot.awk) to scan the amdump output file. It then executes a gnuplot program (amplot.g) to generate the graph. The awk program is written in an enhanced version of awk, such as GNU awk (gawk(1) version 2.15 or later) or nawk(1). During execution, amplot generates a few temporary files that gnuplot uses. These files are deleted at the end of execution. See the amanda(8) man page for more details about Amanda. OPTIONS
-b Generate b/w postscript file (need -p). -c Compress amdump_files after plotting. -e Extend the X (time) axis if needed. -g Direct gnuplot output directly to the X11 display (default). -p Direct postscript output to file YYYYMMDD.ps (opposite of -g). -l Generate landscape oriented output (needs -p). -t T Set the right edge of the plot to be T hours. The amdump_files may be in various compressed formats (compress, gzip, pact, compact). INTERPRETATION
The figure is divided into a number of regions. There are titles on the top that show important statistical information about the configuration and from this execution of amdump. In the figure, the X axis is time, with 0 being the moment amdump was started. The Y axis is divided into 5 regions: QUEUES: How many backups have not been started, how many are waiting on space in the holding disk and how many have been transferred successfully to tape. %BANDWIDTH: Percentage of allowed network bandwidth in use. HOLDING DISK: The higher line depicts space allocated on the holding disk to backups in progress and completed backups waiting to be written to tape. The lower line depicts the fraction of the holding disk containing completed backups waiting to be written to tape including the file currently being written to tape. The scale is percentage of the holding disk. TAPE: Tape drive usage. %DUMPERS: Percentage of active dumpers. The idle period at the left of the graph is time amdump is asking the machines how much data they are going to dump. This process can take a while if hosts are down or it takes them a long time to generate estimates. BUGS
Reports lines it does not recognize, mainly error cases but some are legitimate lines the program needs to be taught about. SEE ALSO
amanda(8), amdump(8), gnuplot(1), compress(1), gzip(1) The Amanda Wiki: : http://wiki.zmanda.com/ AUTHORS
Olafur Gudmundsson <ogud@tis.com> Trusted Information Systems Stefan G. Weichinger <sgw@amanda.org> Amanda 3.3.3 01/10/2013 AMPLOT(8)
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