I had a comment on the non-fitting file names similar to what you said but removed it when I tested the split installed on my linux (split (GNU coreutils) 8.28):
Had the requestor told us what system s/he has, a more specific answer had resulted.
hi, first congratulations on the nice forum!
Can anybody write script, which can make copy of some or all files of the current directory in new directory (called "backups", which must be made in the current directory, if it's not already exist). And bring out a massage (report) with the count... (7 Replies)
Hi,
root@server] df -h
121G 14G 101G 12% /home
147G 126G 14G 91% /backup
We having our site files and images are storing in
/backup/home/user/files/ through symbolic link created in /home directory pointing in /backup directory as following.
root@server] cd /home... (1 Reply)
I am very new to Linux/Unix. Kindly assist the following:
I wish to write a bash shell script called how_many_to_go that calculates and prints the number of days, hours, minutes and/or seconds until the end of the current month (based on the output of the date command).
Do ... (2 Replies)
I am newbie to UNIX. I came across this exercise in one the books.Can anyone help me with this question??????
Write a short Bash script that, given the name of a file as an argument,
reads the file name and creates a new file containing only lines which consist
of one word. Here is an example... (4 Replies)
Hi all,
This is my sample code in /etc/httpd/conf.d/applications.conf file currently we are creating subdomain mannually for every new subdomain. I want to automate this process througs bash script , how its possible.
<VirtualHost *:80>
ServerName google.com
ServerAlias google.com... (5 Replies)
Hi All,
I am unable to write the script for the below requirement.
Requirement:
Main table dir_ancillary table contain three column "dir_ancillary.table_name"," dir_ancillary.text_file_name ", "dir_ancillary.Include" .
This dir_ancillary contain undefined tables in the column... (2 Replies)
Hi Team
I am trying to put together a nice small script to mount my lvm snapshot
Here are my objectives
1 Check whether snapshot is currently mounted. If so echo umount snapshot and exit from the script.
2 If it's not mounting, check whether the mount point exist, If so, create lvm... (0 Replies)
Hello everyone.
I'm a Linux novice trying out a lot of bash scripting lately, as it is so very addictive.
Lately I have been setting up one of my boxes remotely and have been hardening it as much as possible. Please allow me to explain the scenario, as it does tend to become a little... (1 Reply)
#!/bin/bash -i
SAVEIFS=$IFS
IFS=$"\n\b"
picc=$*
if ; then
echo $TDATE
if ; then
touch dummy
touch -t "tdate" dummy
touch -r "dummy" "$picc"
else
echo -e "No mod date value to apply. If there is one in your shell,\ninvoke \eStarted asking advice on this (on Linuxquestions.org).... (9 Replies)
How would I write a value to a physical memory address?
I was able to read a physical memory address (for example, 0x400) using this line:
dd if=/dev/mem count=4 bs=1 skip=$(( 0x400 ))
But I get an error:
dd: 'standard input': cannot skip to specified offset
when I try to write using... (1 Reply)
Discussion started by: rabrandt
1 Replies
LEARN ABOUT DEBIAN
bio::seqio::tab
Bio::SeqIO::tab(3pm) User Contributed Perl Documentation Bio::SeqIO::tab(3pm)NAME
Bio::SeqIO::tab - nearly raw sequence file input/output stream. Reads/writes id" "sequence"
"
SYNOPSIS
Do not use this module directly. Use it via the Bio::SeqIO class.
DESCRIPTION
This object can transform Bio::Seq objects to and from tabbed flat file databases.
It is very useful when doing large scale stuff using the Unix command line utilities (grep, sort, awk, sed, split, you name it). Imagine
that you have a format converter 'seqconvert' along the following lines:
my $in = Bio::SeqIO->newFh(-fh => *STDIN , '-format' => $from);
my $out = Bio::SeqIO->newFh(-fh=> *STDOUT, '-format' => $to);
print $out $_ while <$in>;
then you can very easily filter sequence files for duplicates as:
$ seqconvert < foo.fa -from fasta -to tab | sort -u |
seqconvert -from tab -to fasta > foo-unique.fa
Or grep [-v] for certain sequences with:
$ seqconvert < foo.fa -from fasta -to tab | grep -v '^S[a-z]*control' |
seqconvert -from tab -to fasta > foo-without-controls.fa
Or chop up a huge file with sequences into smaller chunks with:
$ seqconvert < all.fa -from fasta -to tab | split -l 10 - chunk-
$ for i in chunk-*; do seqconvert -from tab -to fasta < $i > $i.fa; done
# (this creates files chunk-aa.fa, chunk-ab.fa, ..., each containing 10
# sequences)
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHORS
Philip Lijnzaad, p.lijnzaad@med.uu.nl
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args :
write_seq
Title : write_seq
Usage : $stream->write_seq($seq)
Function: writes the $seq object into the stream
Returns : 1 for success and 0 for error
Args : Bio::Seq object
perl v5.14.2 2012-03-02 Bio::SeqIO::tab(3pm)