Sponsored Content
Top Forums UNIX for Beginners Questions & Answers Replace a column in tab delimited file with column in other tab delimited file,based on match Post 303030121 by YogeshG on Wednesday 6th of February 2019 07:35:27 AM
Old 02-06-2019
Quote:
Originally Posted by nezabudka
Add variable OFS='\t'

--- Post updated at 11:12 ---

Conveniently view output
awk ... | cat -vet
Thanks nezabudka. It worked.!! Smilie
This User Gave Thanks to YogeshG For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Trim String in 3rd Column in Tab Delimited File...SED/PERL/AWK?

Hey Everybody, I am having much trouble figuring this out, as I am not really a programmer..:mad: Datafile.txt Column0 Column1 Column2 ABC DEF xxxGHI I am running using WGET on a cronjob to grab a datafile, but I need to cut the first three characters from... (6 Replies)
Discussion started by: rickdini
6 Replies

2. Shell Programming and Scripting

Delete parts of a string of character in one given column of a tab delimited file

I would like to remove characters from column 7 so that from an input file looking like this: >HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD I get something like that in an output file: ... (13 Replies)
Discussion started by: matlavmac
13 Replies

3. Shell Programming and Scripting

Delete first column in tab-delimited text-file

I have a large text-file with tab-delimited genetic data that looks like: KSC112 KSC234 0 0 1 1 A G C T I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns). Does anyone have an idea how to do this? (2 Replies)
Discussion started by: andmal
2 Replies

4. UNIX for Dummies Questions & Answers

Add a new column to a tab delimited text file

I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies

5. Shell Programming and Scripting

Using sed on 1st column of tab delimited file

Hi all, I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such: 1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
Discussion started by: Hkins552
4 Replies

6. UNIX for Dummies Questions & Answers

Using awk to log transform a column in a tab-delimited text file?

How do I use awk to log transform the fifth column of a tab-delimited text file? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies

7. Shell Programming and Scripting

Extract second column tab delimited file

I have a file which looks like this: 73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com 73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org 73450 articles and news developmental psychology 2006-03-30... (1 Reply)
Discussion started by: shoaibjameel123
1 Replies

8. UNIX for Dummies Questions & Answers

add (append) a column in a tab delimited file

I have a file having the following entries: test1 test2 test3 11 22 33 22 44 66 99 99 44 --- I want to add a column so that the above file becomes: test1 test2 test3 notest 11 22 33 * 22 44 66 * 99 99 44 * --- Thanks (6 Replies)
Discussion started by: mary271
6 Replies

9. Shell Programming and Scripting

Convert a 3 column tab delimited file to a matrix

Hi all, I have a 3 columns input file like this: CPLX9PC-4943 CPLX9PC-4943 1 CPLX9PC-4943 CpxID123 0 CPLX9PC-4943 CpxID126 0 CPLX9PC-4943 CPLX9PC-5763 0.5 CPLX9PC-4943 CpxID13 0 CPLX9PC-4943 CPLX9PC-6163 0 CPLX9PC-4943 CPLX9PC-6164 0.04... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies

10. Shell Programming and Scripting

Delete an entire column from a tab delimited file

Hi, Can anyone please tell me about how we can delete an entire column from a tab delimited file? Mu input_file.txt looks like this: And I want the output as: I used the below code nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
Discussion started by: sampoorna
5 Replies
Regexp::Common::delimited(3pm)				User Contributed Perl Documentation			    Regexp::Common::delimited(3pm)

NAME
Regexp::Common::delimited -- provides a regex for delimited strings SYNOPSIS
use Regexp::Common qw /delimited/; while (<>) { /$RE{delimited}{-delim=>'"'}/ and print 'a " delimited string'; /$RE{delimited}{-delim=>'/'}/ and print 'a / delimited string'; } DESCRIPTION
Please consult the manual of Regexp::Common for a general description of the works of this interface. Do not use this module directly, but load it via Regexp::Common. $RE{delimited}{-delim}{-esc} Returns a pattern that matches a single-character-delimited substring, with optional internal escaping of the delimiter. When "-delim=S" is specified, each character in the sequence S is a possible delimiter. There is no default delimiter, so this flag must always be specified. If "-esc=S" is specified, each character in the sequence S is the delimiter for the corresponding character in the "-delim=S" list. The default escape is backslash. For example: $RE{delimited}{-delim=>'"'} # match "a " delimited string" $RE{delimited}{-delim=>'"'}{-esc=>'"'} # match "a "" delimited string" $RE{delimited}{-delim=>'/'} # match /a / delimited string/ $RE{delimited}{-delim=>q{'"}} # match "string" or 'string' Under "-keep" (See Regexp::Common): $1 captures the entire match $2 captures the opening delimiter (provided only one delimiter was specified) $3 captures delimited portion of the string (provided only one delimiter was specified) $4 captures the closing delimiter (provided only one delimiter was specified) $RE{quoted}{-esc} A synonym for $RE{delimited}{q{-delim='"`}{...}} SEE ALSO
Regexp::Common for a general description of how to use this interface. AUTHOR
Damian Conway (damian@conway.org) MAINTAINANCE
This package is maintained by Abigail (regexp-common@abigail.be). BUGS AND IRRITATIONS
Bound to be plenty. For a start, there are many common regexes missing. Send them in to regexp-common@abigail.be. LICENSE and COPYRIGHT This software is Copyright (c) 2001 - 2009, Damian Conway and Abigail. This module is free software, and maybe used under any of the following licenses: 1) The Perl Artistic License. See the file COPYRIGHT.AL. 2) The Perl Artistic License 2.0. See the file COPYRIGHT.AL2. 3) The BSD Licence. See the file COPYRIGHT.BSD. 4) The MIT Licence. See the file COPYRIGHT.MIT. perl v5.14.2 2010-02-23 Regexp::Common::delimited(3pm)
All times are GMT -4. The time now is 09:09 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy