02-06-2019
Quote:
Originally Posted by
nezabudka
Add variable OFS='\t'
--- Post updated at 11:12 ---
Conveniently view output
awk ... | cat -vet
Thanks nezabudka. It worked.!!
This User Gave Thanks to YogeshG For This Post:
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hey Everybody,
I am having much trouble figuring this out, as I am not really a programmer..:mad:
Datafile.txt
Column0 Column1 Column2
ABC DEF xxxGHI
I am running using WGET on a cronjob to grab a datafile, but I need to cut the first three characters from... (6 Replies)
Discussion started by: rickdini
6 Replies
2. Shell Programming and Scripting
I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Discussion started by: matlavmac
13 Replies
3. Shell Programming and Scripting
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
Discussion started by: andmal
2 Replies
4. UNIX for Dummies Questions & Answers
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
5. Shell Programming and Scripting
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
Discussion started by: Hkins552
4 Replies
6. UNIX for Dummies Questions & Answers
How do I use awk to log transform the fifth column of a tab-delimited text file? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
7. Shell Programming and Scripting
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
Discussion started by: shoaibjameel123
1 Replies
8. UNIX for Dummies Questions & Answers
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Discussion started by: mary271
6 Replies
9. Shell Programming and Scripting
Hi all,
I have a 3 columns input file like this:
CPLX9PC-4943 CPLX9PC-4943 1
CPLX9PC-4943 CpxID123 0
CPLX9PC-4943 CpxID126 0
CPLX9PC-4943 CPLX9PC-5763 0.5
CPLX9PC-4943 CpxID13 0
CPLX9PC-4943 CPLX9PC-6163 0
CPLX9PC-4943 CPLX9PC-6164 0.04... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies
10. Shell Programming and Scripting
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
Discussion started by: sampoorna
5 Replies
LEARN ABOUT DEBIAN
stag-flatten
STAG-FLATTEN(1p) User Contributed Perl Documentation STAG-FLATTEN(1p)
NAME
stag-flatten - turns stag data into a flat table
SYNOPSIS
stag-flatten -c name -c person/name dept MyFile.xml
DESCRIPTION
reads in a file in a stag format, and 'flattens' it to a tab-delimited table format. given this data:
(company
(dept
(name "special-operations")
(person
(name "james-bond"))
(person
(name "fred"))))
the above command will return a two column table
special-operations james-bond
special-operations fred
If there are multiple values for the columns within the node, then the cartesian product will be calculated
USAGE
stag-flatten [-p PARSER] [-c COLS] [-c COLS] NODE <file>
ARGUMENTS
-p|parser FORMAT
FORMAT is one of xml, sxpr or itext
xml assumed as default
-c|column COL1,COL2,COL3,..
the name of the columns/elements to write out
this can be specified either with multiple -c arguments, or with a comma-seperated (no spaces) list of column (terminal node) names
after a single -c
-n|nest
if set, then the output will be a compress repeating values into the same row; each cell in the table will be enclosed by {}, and will
contain a comma-delimited set of values
SEE ALSO
Data::Stag
perl v5.10.0 2008-12-23 STAG-FLATTEN(1p)