02-06-2019
Add variable OFS='\t'
--- Post updated at 11:12 ---
Conveniently view output
awk ... | cat -vet
This User Gave Thanks to nezabudka For This Post:
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hey Everybody,
I am having much trouble figuring this out, as I am not really a programmer..:mad:
Datafile.txt
Column0 Column1 Column2
ABC DEF xxxGHI
I am running using WGET on a cronjob to grab a datafile, but I need to cut the first three characters from... (6 Replies)
Discussion started by: rickdini
6 Replies
2. Shell Programming and Scripting
I would like to remove characters from column 7 so that from an input file looking like this:
>HWI-EAS422_12:4:1:69:89 GGTTTAAATATTGCACAAAAGGTATAGAGCGT U0 1 0 0 ref_chr8.fa 6527777 F DD
I get something like that in an output file:
... (13 Replies)
Discussion started by: matlavmac
13 Replies
3. Shell Programming and Scripting
I have a large text-file with tab-delimited genetic data that looks like:
KSC112 KSC234 0 0 1 1 A G C T
I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns).
Does anyone have an idea how to do this? (2 Replies)
Discussion started by: andmal
2 Replies
4. UNIX for Dummies Questions & Answers
I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
5. Shell Programming and Scripting
Hi all,
I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such:
1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
Discussion started by: Hkins552
4 Replies
6. UNIX for Dummies Questions & Answers
How do I use awk to log transform the fifth column of a tab-delimited text file? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies
7. Shell Programming and Scripting
I have a file which looks like this:
73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com
73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org
73450 articles and news developmental psychology 2006-03-30... (1 Reply)
Discussion started by: shoaibjameel123
1 Replies
8. UNIX for Dummies Questions & Answers
I have a file having the following entries:
test1 test2 test3
11 22 33
22 44 66
99 99 44
---
I want to add a column so that the above file becomes:
test1 test2 test3 notest
11 22 33 *
22 44 66 *
99 99 44 *
---
Thanks (6 Replies)
Discussion started by: mary271
6 Replies
9. Shell Programming and Scripting
Hi all,
I have a 3 columns input file like this:
CPLX9PC-4943 CPLX9PC-4943 1
CPLX9PC-4943 CpxID123 0
CPLX9PC-4943 CpxID126 0
CPLX9PC-4943 CPLX9PC-5763 0.5
CPLX9PC-4943 CpxID13 0
CPLX9PC-4943 CPLX9PC-6163 0
CPLX9PC-4943 CPLX9PC-6164 0.04... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies
10. Shell Programming and Scripting
Hi,
Can anyone please tell me about how we can delete an entire column from a tab delimited file?
Mu input_file.txt looks like this:
And I want the output as:
I used the below code
nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
Discussion started by: sampoorna
5 Replies
LEARN ABOUT MOJAVE
regexp::common::delimited5.18
Regexp::Common::delimited(3) User Contributed Perl Documentation Regexp::Common::delimited(3)
NAME
Regexp::Common::delimited -- provides a regex for delimited strings
SYNOPSIS
use Regexp::Common qw /delimited/;
while (<>) {
/$RE{delimited}{-delim=>'"'}/ and print 'a " delimited string';
/$RE{delimited}{-delim=>'/'}/ and print 'a / delimited string';
}
DESCRIPTION
Please consult the manual of Regexp::Common for a general description of the works of this interface.
Do not use this module directly, but load it via Regexp::Common.
$RE{delimited}{-delim}{-esc}
Returns a pattern that matches a single-character-delimited substring, with optional internal escaping of the delimiter.
When "-delim=S" is specified, each character in the sequence S is a possible delimiter. There is no default delimiter, so this flag must
always be specified.
If "-esc=S" is specified, each character in the sequence S is the delimiter for the corresponding character in the "-delim=S" list. The
default escape is backslash.
For example:
$RE{delimited}{-delim=>'"'} # match "a " delimited string"
$RE{delimited}{-delim=>'"'}{-esc=>'"'} # match "a "" delimited string"
$RE{delimited}{-delim=>'/'} # match /a / delimited string/
$RE{delimited}{-delim=>q{'"}} # match "string" or 'string'
Under "-keep" (See Regexp::Common):
$1 captures the entire match
$2 captures the opening delimiter (provided only one delimiter was specified)
$3 captures delimited portion of the string (provided only one delimiter was specified)
$4 captures the closing delimiter (provided only one delimiter was specified)
$RE{quoted}{-esc}
A synonym for $RE{delimited}{q{-delim='"`}{...}}
SEE ALSO
Regexp::Common for a general description of how to use this interface.
AUTHOR
Damian Conway (damian@conway.org)
MAINTAINANCE
This package is maintained by Abigail (regexp-common@abigail.be).
BUGS AND IRRITATIONS
Bound to be plenty.
For a start, there are many common regexes missing. Send them in to regexp-common@abigail.be.
LICENSE and COPYRIGHT
This software is Copyright (c) 2001 - 2009, Damian Conway and Abigail.
This module is free software, and maybe used under any of the following licenses:
1) The Perl Artistic License. See the file COPYRIGHT.AL.
2) The Perl Artistic License 2.0. See the file COPYRIGHT.AL2.
3) The BSD Licence. See the file COPYRIGHT.BSD.
4) The MIT Licence. See the file COPYRIGHT.MIT.
perl v5.18.2 2013-03-08 Regexp::Common::delimited(3)