Outputting characters after a given string and reporting the characters in the row below --sed
I have this fastq file:
And I am using this script to output the three characters after this sting GCATGAAAACATACA:
This is my current output:
However, I would like to output the three characters in the same position two rows below from each sequence, something like this:
Is there a way to accomplish this with sed? operative system W10; shell cygwin
Hi all,
if for example I had a variable containing the string 'hello', is the any way I can output, for example, the e and the 2nd l based on their position in the string not their character (in this case 2 and 4)?
any general pointers in the right direction will be much appreciated, at... (3 Replies)
Hi Please help me to refine my syntax. I want to delete the excess characters from the out put below.
-bash-3.00$ top -b -n2 -d 00.20 |grep Cpu|tail -1 | awk -F ":" '{ print $2 }' | cut -d, -f1
4.4% us
now i want to delete the % and us. How wil i do that to make it just 4.4.
Thanks (7 Replies)
Hi,
I've a csv file seperated by '|' from which I'm trying to remove the excess '|' characters more than the existing fields. My CSV looks like as below.
HRLOAD|Service|AddChange|EN
PERSONID|STATUS|LASTNAME|FIRSTNAME|ITDCLIENTUSERID|ADDRESSLINE1
10000001|ACTIVE|Testazar1|Testore1|20041|||... (24 Replies)
sed -e "s// /g" old.txt > new.txt
While I do know some control characters need to be escaped, can normal characters also be escaped and still work the same way? Basically I do not know all control characters that have a special meaning, for example, ?, ., % have a meaning and have to be escaped... (11 Replies)
helloo
I wonder if there's a way to cut characters out of a string and keep only
the last 2 by using sed.
For example if there's the todays' date:
2012-05-06
and we only want to keep the last 2 characters which are the day.
Is there a quick way to do it with sed? (2 Replies)
Hey guys,
I know that title is a mouthful - I'll try to better explain my struggles a little better...
What I'm trying to do is:
1. Query a db and output to a file, a list of column data.
2. Then, for each line in this file, repeat these values but wrap them with:
ITEM{
... (3 Replies)
Hi,
I have a xml file (Config.xml)
<Header name="" TDate="" PDate="">
<Config>
{"config" { "Nation" "Pri:|Sec:"}}
</Config>
</Header>
Now I wanted to printed all the strings between "". I tried the following
cat Config.xml | sed -n 's/.*\.*//p'
... (8 Replies)
Hi,
I hope you can help me out please?
I need to replace from character 8-16 with AAAAAAAA and the rest should stay the same after character 16
gtwrhtrd11111111rjytwyejtyjejetjyetgeaEHT
wrehrhw22222222hytekutkyukrylryilruilrGEQTH
hrwjyety33333333gtrhwrjrgkreglqeriugn;RUGNEURGU
... (4 Replies)
I have a file that looks like this:
>ID 1
AATAATTCCGGATCGTGC
>ID 2
TTTGACAGTAGAC
>ID 3
AGACGATGACGAT
I am using the following script to report if AATTCCGGATCG is present in any sequence:
awk 'FNR==1{n=substr(FILENAME,1,index(FILENAME,".")-1)} { print n "\t"... (10 Replies)
Discussion started by: Xterra
10 Replies
LEARN ABOUT DEBIAN
locale::script
Locale::Script(3perl) Perl Programmers Reference Guide Locale::Script(3perl)NAME
Locale::Script - standard codes for script identification
SYNOPSIS
use Locale::Script;
$script = code2script('phnx'); # 'Phoenician'
$code = script2code('Phoenician'); # 'Phnx'
$code = script2code('Phoenician',
LOCALE_CODE_NUMERIC); # 115
@codes = all_script_codes();
@scripts = all_script_names();
DESCRIPTION
The "Locale::Script" module provides access to standards codes used for identifying scripts, such as those defined in ISO 15924.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 15924
four-letter codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying scripts. The ones currently supported are:
alpha
This is a set of four-letter (capitalized) codes from ISO 15924 such as 'Phnx' for Phoenician.
This code set is identified with the symbol "LOCALE_SCRIPT_ALPHA".
The Zxxx, Zyyy, and Zzzz codes are not used.
This is the default code set.
numeric
This is a set of three-digit numeric codes from ISO 15924 such as 115 for Phoenician.
This code set is identified with the symbol "LOCALE_SCRIPT_NUMERIC".
ROUTINES
code2script ( CODE [,CODESET] )
script2code ( NAME [,CODESET] )
script_code2code ( CODE ,CODESET ,CODESET2 )
all_script_codes ( [CODESET] )
all_script_names ( [CODESET] )
Locale::Script::rename_script ( CODE ,NEW_NAME [,CODESET] )
Locale::Script::add_script ( CODE ,NAME [,CODESET] )
Locale::Script::delete_script ( CODE [,CODESET] )
Locale::Script::add_script_alias ( NAME ,NEW_NAME )
Locale::Script::delete_script_alias ( NAME )
Locale::Script::rename_script_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Script::add_script_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Script::delete_script_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes man page.
SEE ALSO
Locale::Codes
Locale::Constants
http://www.unicode.org/iso15924/
Home page for ISO 15924.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 1997-2001 Canon Research Centre Europe (CRE).
Copyright (c) 2001-2010 Neil Bowers
Copyright (c) 2010-2011 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.14.2 2011-09-26 Locale::Script(3perl)