Sponsored Content
Top Forums Shell Programming and Scripting How transpose column in a row? Post 303027905 by Salvatore_espos on Friday 28th of December 2018 04:26:31 AM
Old 12-28-2018
How transpose column in a row?

Hello guys,
First of all happy holidays and happy new year.
I'm new in bioinformatic and also it is my first time that I write in this forum. Therefore, sorry if I make some mistakes.
I'm writing to ask your help to fix a problem:
I have a file like this:

Code:
gene1	GO:0016491|GO:0055114
gene2	GO:0004665|GO:0006571|GO:0008977|GO:0055114
gene3	GO:0005515
gene4	GO:0016491|GO:0055114
gene5	GO:0004427|GO:0009678|GO:0015992|GO:0016020

I have to modify the file in order to have an output like this:
Code:
gene1.     GO:0016491
gene1      GO:0055114
gene2      GO:0004665
gene2      GO:0006571
gene2      GO:0008977
gene2      GO:0055114


Could anyone help me to modify the file, please?
Thank you to all for your help in advance
Sal

Moderator's Comments:
Mod Comment edit by bakunin: Please use CODE-tags not only for code but also for data and terminal output. Thank you.

Last edited by bakunin; 12-28-2018 at 06:02 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Row to column transpose

Can we transpose rows to columns? Fields within row are separated by a comma. (10 Replies)
Discussion started by: videsh77
10 Replies

2. Shell Programming and Scripting

Transpose column to row

Hi i have a file which has values seperated by "," as shown below and I want to transpose for every doc_id in one row. Input: DOC_ID,KEYWORD 105,REGISTROS 105,GEOLOGIA 105,NUCLEOS 105,EXPEDIENTE 105,PROGRAMAS 10025,EXPEDIENTE 10025,LOCALIZACIONES 10025,OFICIOS 10025,PROGRAMAS... (4 Replies)
Discussion started by: juelillo
4 Replies

3. Shell Programming and Scripting

Row to column transpose between same pattern.

Hi All, I have been trying to transpose rows to column in an large file (about 15000 lines) between matching pattern. Searched all posts in this forum, but not able find the solution to my problem. Any help appreciated.!! Input /*------XXXXXX-------*/ owner: XXXX location: XXXX... (3 Replies)
Discussion started by: RobP
3 Replies

4. UNIX for Dummies Questions & Answers

Row to column transpose

Hi there, Below is sample three rows which i need transpose into multiple rows. By keeping first 2 fields static and split them into multiple rows depend following date field. Each into seperate rows. Sample code: ... (6 Replies)
Discussion started by: ganeshd
6 Replies

5. Shell Programming and Scripting

Column to row Transpose

Hi Folks, Iam a kinda newbie to unix shell scripting, the scenario is i have a text file containing the following info Charlie chicago 15 Charlie newyork 26 jonny chicago 14 jonny newyork 15 joe chicago 15 joe newyork 18output should be Name chicago ... (3 Replies)
Discussion started by: tech_frk
3 Replies

6. Shell Programming and Scripting

Transpose column to row - awk

Hi there, I have a small csv file example below: source,cu_001,cu_001_volume,cu_001_mass,cu_002,cu_002_volume,cu_002_mass,cu_003,cu_003_volume,cu_003_mass ja116,1.33,3024000,9374400,1.54,3026200,9375123,1.98,3028000,9385512 I want to transpose columns to rows starting at the second... (3 Replies)
Discussion started by: theflamingmoe
3 Replies

7. Shell Programming and Scripting

To transpose row into column

Hi All, In shell, I have below data coming from some some text file as below: . 351706 5861.8 0.026 0.012 12.584 0.026 0.012 12.582 0.000 0.000 0.000 Now i need the above data to be transposed as below 351706... (16 Replies)
Discussion started by: Anamica
16 Replies

8. Shell Programming and Scripting

Transpose row to column

I'm using the testawk.awk from the following thread https://www.unix.com/shell-programming-and-scripting/18897-row-column-transpose.htmlI'm getting the following output fieldname1 data1 fieldname2 data2 fieldname3 data3 How can I get like this instead 1 fieldname1 data1 2 fieldname2 data2... (1 Reply)
Discussion started by: makkan
1 Replies

9. Shell Programming and Scripting

Transpose from row to column using timestamp in first column

Gents, Transpose from row to column, taking in consideration the first column, which contends the date. Input file 72918,111000009,111000009,111000009,111000009,111000009,111000009,111000009,111000009,111000009 72918,2356,2357,2358,2359,2360,2361,2362,2363,2364 72918,0,0,0,0,0,0,0,0,0... (12 Replies)
Discussion started by: jiam912
12 Replies

10. UNIX for Beginners Questions & Answers

Transpose the Row and column

Hi, I have data in form of A ram B shyam C seeta D geeta A bob B methew C Richad D Mike and i want it in this form. A B C D ram shyam seeta geeta bob methew Richard Mike. please help by providing the scripting for this. (3 Replies)
Discussion started by: ricbha
3 Replies
CGI::Pretty(3pm)					 Perl Programmers Reference Guide					  CGI::Pretty(3pm)

NAME
CGI::Pretty - module to produce nicely formatted HTML code SYNOPSIS
use CGI::Pretty qw( :html3 ); # Print a table with a single data element print table( TR( td( "foo" ) ) ); DESCRIPTION
CGI::Pretty is a module that derives from CGI. It's sole function is to allow users of CGI to output nicely formatted HTML code. When using the CGI module, the following code: print table( TR( td( "foo" ) ) ); produces the following output: <TABLE><TR><TD>foo</TD></TR></TABLE> If a user were to create a table consisting of many rows and many columns, the resultant HTML code would be quite difficult to read since it has no carriage returns or indentation. CGI::Pretty fixes this problem. What it does is add a carriage return and indentation to the HTML code so that one can easily read it. print table( TR( td( "foo" ) ) ); now produces the following output: <TABLE> <TR> <TD> foo </TD> </TR> </TABLE> Tags that won't be formatted The <A> and <PRE> tags are not formatted. If these tags were formatted, the user would see the extra indentation on the web browser caus- ing the page to look different than what would be expected. If you wish to add more tags to the list of tags that are not to be touched, push them onto the @AS_IS array: push @CGI::Pretty::AS_IS,qw(CODE XMP); Customizing the Indenting If you wish to have your own personal style of indenting, you can change the $INDENT variable: $CGI::Pretty::INDENT = " "; would cause the indents to be two tabs. Similarly, if you wish to have more space between lines, you may change the $LINEBREAK variable: $CGI::Pretty::LINEBREAK = " "; would create two carriage returns between lines. If you decide you want to use the regular CGI indenting, you can easily do the following: $CGI::Pretty::INDENT = $CGI::Pretty::LINEBREAK = ""; BUGS
This section intentionally left blank. AUTHOR
Brian Paulsen <Brian@ThePaulsens.com>, with minor modifications by Lincoln Stein <lstein@cshl.org> for incorporation into the CGI.pm dis- tribution. Copyright 1999, Brian Paulsen. All rights reserved. This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. Bug reports and comments to Brian@ThePaulsens.com. You can also write to lstein@cshl.org, but this code looks pretty hairy to me and I'm not sure I understand it! SEE ALSO
CGI perl v5.8.0 2002-06-01 CGI::Pretty(3pm)
All times are GMT -4. The time now is 09:27 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy