Hi,
I would like to learn shell scripting in UNIX. Can any one please give me the support and share the information/documents with me.
If any documents please post it to aswanikumar_nimmagadda@yahoo.co.in
Thanks in advance...!!! (3 Replies)
Hi Experts,
Here is what I am trying to do.
1) say I have a file with below strings
database1
database2
database3
data10gdb1
data10gdb2
databasewithoutdigit
2) I want to get the below output.
(- if there is any digit at the end of the string, I need to remove it)
(- Any... (3 Replies)
Hi all,
i have such string stored in a variable
var1 = 00000120
i want the o/p
var1 = 120
is it possible to have such o/p in ksh/bash ...
thanx in advance for the help
sonu (3 Replies)
Hi
I am new to world on unix scripting so any assistance would be gratefully appreciated,
I am trying to write a script which reads through a file, reads in line by line, searches for a pattern, copies string after it and then to do a search and replace elsehwere in the line,
so the... (7 Replies)
Hi there, im sure this is really simple but i have some strings like this
e1000g123001
e1000g0
nge11101
nge3and i want to create two variables ($DRIVER and $INSTANCE). the first one containing the alpha characters that make up the first part of the string, e.g. e1000g or nge and the... (9 Replies)
Hi,
How to add trailer record at the end of the flat file in the unix ksh shell scripting
can you please let me know the procedure
Regards
Srikanth (3 Replies)
Hi
I have a very large data file with several hundred columns and millions of lines.
The important data is in the last set of columns with variable numbers of tab delimited fields in front of it on each line.
Im currently trying sed to get the data out - I want anything beetween :RES and... (4 Replies)
My input is as below :
/splunk/scrubbed/rebate/IFIND.REBTE.WROC.txt
/splunk/scrubbed/rebate/IFIND.REBTE.WROC.txt
/splunk/scrubbed/loyal/IFIND.HELLO.WROC.txt
/splunk/scrubbed/triumph/ifind.triumph.txt
From the above input I want to extract the file names only .
Basically I want to... (5 Replies)
Hello,
I have a log file with logs such as
01/05/2017 10:23:41 : file.log.38: database error, MODE=SINGLE, LEVEL=critical, STATE: 01170255 (mode main
how can i use perl to extract the 8-digit number below from the string
01170255
Thanks (7 Replies)
Discussion started by: james2009
7 Replies
LEARN ABOUT DEBIAN
proftmb
PROFTMB(1) User Commands PROFTMB(1)NAME
proftmb - per-residue prediction of bacterial transmembrane beta barrels
SYNOPSIS
proftmb [options]
DESCRIPTION
proftmb predicts bacterial transmembrane beta barrels from sequence using profile fed Hidden Markov Models (HMM).
Output format
Self-annotating. Letters of prediction: 'i' - inside cytoplasm, 'O' - outside cytoplasm, 'U' - up (on chain moving out of cytoplasm), 'D'
- down (on chain moving into cytoplasm).
References
Bigelow, H. and Rost, B. (2006). PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Res,
34(Web Server issue), W186-8.
To invoke the menu, type:
proftmb --menu
The options are:
-d, --directory-root <STRING>
root path where files (options -s,-r,-l,-a,-e,-t,-u,-z,-n) reside
-a, --reduction-state-decode <STRING>
state reduction for decoding
-b, --reduction-state-report <STRING>
state reduction for reporting
-m, --membrane-strand-states <STRING>
list of membrane strand states
-z, --z-curve-file
<STRING> file containing means and sd's at integral length values
-x, --z-calibration-curve <STRING>
file mapping coverage and accuracy values to z-scores
-n, --null-frequency <STRING>
background frequency file
-c, --minimum-score-cutoff <DOUBLE>
minimum z-score for per-residue prediction
-o, --outfile-prefix <STRING>
output file prefix for the three files generated: PREFIX_dat.txt, PREFIX_proftmb_pretty.txt PREFIX_proftmb_tabular.txt
-s, --static-model-data <STRING>
data representing the model architecture
-t, --trained-params <STRING>
params representing the encoded training data
-q, --test-blastQ-file-or-dir <STRING>
psiblast profile (-Q) or directory (full pathname or relative to current directory) with many profiles
-w, --single-sequence-name <STRING>
if -q option points to a single file, this is the name
-v, --list-blastQ-files <STRING>
list of psiblast files to process in directory (leave blank to process all files)
--outfile-pretty <STRING>
pretty output file (overrides automatic name PREFIX_proftmb_pretty.txt)
--outfile-tab
<STRING> tabulated output file (overrides automatic name PREFIX_proftmb_tabular.txt)
--outfile-dat
<STRING> data output file (overrides automatic name PREFIX_dat.txt)
--version
<BOOL> output version information and exit
--quiet
<BOOL> be quiet
EXAMPLES
proftmb @/usr/share/proftmb/options -q /usr/share/doc/proftmb/examples/example.Q -o /tmp/example
The above produces 3 output files: /tmp/example_proftmb_tabular.txt, /tmp/example_proftmb_pretty.txt and /tmp/example_dat.txt. Compare
these to the examples in /usr/share/doc/proftmb/examples.
BUGS
Please report bugs at <https://rostlab.org/bugzilla3/enter_bug.cgi?product=proftmb>.
COPYRIGHT
Copyright (C) 2004 Henry Bigelow
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
proftmb 1.1.10 February 2012 PROFTMB(1)