If vgersh99's solution if matching lines are less than 30 lines apart some lines are printed multiple times (overlapping regions).
Try this modification:
Works great! Initially it was outputting 40 million rows, but that was my bad because a "." had made its way into the column of data in file2 and file1 had many rows for which $3 was a "."
Last edited by Geneanalyst; 10-31-2018 at 07:22 AM..
I am trying to automate a process of searching through a set of files and replace all occurrences of a formatted text with the next item in the list of a second file. Basically i need to replace all instances of T????CLK???? with an IP address from a list in a second file. the second file is one IP... (9 Replies)
Hi all,
Please your help with this.
I have 2 files,
File_1-->contains a column of N numbers
File_2-->contains many lines with other info and numbers from File_1 within it.
I would like to get from File_2 all the lines containing within the same line each of N numbers from File_1... (4 Replies)
File1 row is same as column 2 in file 2.
Also file 2 will either start with A, B or C.
And 3rd column in file 2 is always F2.
When column 2 of file 2 matches file1 column, print all those rows into a separate file.
Here is an example.
file 1:
100
103
104
108
file 2:
... (6 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Hello to all,
I hope somebody could help me with this:
I have this File1 (real has 5 million of lines):
Number Category
--------------- --------------------------------------
8734060355 3
8734060356 ... (6 Replies)
I'm trying to use awk to do the following. I have file1 with many lines, each containing 5 fields describing an individual set. I have file2 which is a template config file with variable space holders to be replaced by the values in file1. I would like to substitute each set of values in file1 with... (6 Replies)
I have a list of IDs in file1 and a list of sequences in file2. I can print sequences from file2, but I'm asking for help in printing the sequences in the same order as the IDs appear in file1.
file1:
EN_comp12952_c0_seq3:367-1668
ES_comp17168_c1_seq6:1-864
EN_comp13395_c3_seq14:231-1088... (5 Replies)
I have 2 file, file1 and file2. file1 has some keys and file2 has keys+some other data. I want to remove the lines from file2,if the key for that line exists in file1.
file1:
key1
key2
flie2:
key1,moredata
key2,moredata
key3,moredata
Required output:
key3,moredata
Thanks
EDIT:... (6 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited.
I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)