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Full Discussion: awk incorrect format
Top Forums Shell Programming and Scripting awk incorrect format Post 303025261 by Geneanalyst on Monday 29th of October 2018 03:52:55 PM
Old 10-29-2018
Quote:
Originally Posted by Corona688
I note that none of the data you posted looks like it came from strictly tab-separated files. I suspect rogue spaces and/or carriage returns in your data.

From your example file1 and file2 I get
Code:
rs12044739    1    52828739    CT
rs72899818      1       TT      TC
rs10157619    1    52836736    GA
rs6684941    1    52844478    AG








Sorry, I forgot to add a step. I have edited my post to reflect this....
 

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XZDIFF(1)							     XZ Utils								 XZDIFF(1)

NAME
xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files SYNOPSIS
xzcmp [cmp_options] file1 [file2] xzdiff [diff_options] file1 [file2] lzcmp [cmp_options] file1 [file2] lzdiff [diff_options] file1 [file2] DESCRIPTION
xzcmp and xzdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), bzip2(1), or lzop(1). All options specified are passed directly to cmp(1) or diff(1). If only one file is specified, then the files compared are file1 (which must have a suffix of a supported compression format) and file1 from which the compression format suffix has been stripped. If two files are specified, then they are uncompressed if necessary and fed to cmp(1) or diff(1). The exit status from cmp(1) or diff(1) is preserved. The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils. SEE ALSO
cmp(1), diff(1), xz(1), gzip(1), bzip2(1), lzop(1), zdiff(1) BUGS
Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified. Tukaani 2011-03-19 XZDIFF(1)
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