File comaprsons for the Huge data files ( around 60G) - Need optimized and teh best way to do this Post: 303025154

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LEARN ABOUT DEBIAN

dbswiss

DBSWISS(1)							   User Commands							DBSWISS(1)

NAME

       dbSwiss - create DBM version of Swiss-Prot data

SYNOPSIS

       /usr/share/librg-utils-perl/dbSwiss [OPTIONS]

       /usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot --infile /data/swissprot/uniprot_sprot.dat

       /usr/share/librg-utils-perl/dbSwiss [--help] [--man]

DESCRIPTION

       dbSwiss creates DBM version of Swiss-Prot data.	This procedure is to replace splitSwiss.pl.  splitSwiss.pl saves Swiss-Prot records in
       separate files resulting in over 13 million relatively tiny files that take very long to create and rsync.  dbSwiss instead saves each
       record into a DBM database that is optimized for fast retrieval.

OPTIONS

       -d, --datadir=path
	   directory of database files, default: '/mnt/project/rost_db/data/swissprot'

       --debug
       --nodebug
       --first20
       --nofirst20
	   process only first 20 records, for debugging

       --help
       -i, --infile=path
	   Swiss-Prot data flatfile, default: '/mnt/project/rost_db/data/swissprot/uniprot_sprot.dat'.

       --man
       --quiet
       --noquiet
	   do not print progress status

       --readback
       --noreadback
	   read records back after storing and print them

       --table
	   name of database table and consequently the base name of database files, default: 'dbswiss'

       --version
       -w, --workdir=path
	   Optional working directory. Automatically created and removed if not defined.

AUTHOR

       Laszlo Kajan <lkajan@rostlab.org>

1.0.43								    2011-11-28								DBSWISS(1)