After much experimenting with the -f feature I finally figured out how to trick it. It needs %.0f to make it print integers, followed by whatever string you want.
I suspect it's not really meant for that and might not work the same or reliably on other systems.
These 2 Users Gave Thanks to Corona688 For This Post:
I know the Sun Solaries versions are ( 2.3 , 2.4 , 2.5 ... 7 , 8 ) .
But some times I see sun os v5.x what does it mean ??
also what is the last new machine for sun and what are its details specifications .
Thanks (3 Replies)
Hello Again,
Ok guys. Thanks again for your help last time but I am in need of your experience again. I wrote this script:
#!/bin/sh
# List either files or directories in individual accounts
# using 1, 2 or 3 with invalid
case $1 in
echo select 1 to see the FILES in your... (3 Replies)
this is the simple question, please help me!
the question is: how to send exactly 50 ICMP Echo request packets with 500 bytes of payload to 202.139.129.221?
I tried to use ping -F 500 202.139.129.221, but it didn't work.
Thanks! (6 Replies)
I am trying to check through all of a certain type of file in all main directories, and find the top 10 that are taking up the most space. How can I do that? I was thinking like du *.file | sort -n | head (1 Reply)
Ive got some output in a file that looks exactly like this:
1
-----------
1542
1 record(s) selected.
How do I just extract that 1542 and drop it into another file or (preferrably) a variable (using a ksh script) (9 Replies)
I have a file name in this format
ABC_WIRE_TRANS_YYYYMMDD_00.DAT
I need to cut out the _00 out of the file name everytime. It could be _00, _01,_02, etc ....
How do I cut it out to look as follows?
ABC_WIRE_TRANS_YYYYMMDD.DAT (6 Replies)
Hi everybody:
Could anybody tell me if I have several files which each one it has this pattern name:
name1.dat name2.dat name3.dat name4.dat name10.dat name11.dat name30.dat
If I would like create one like:
name_total.dat
If I do:
paste name*.dat > name_total.dat (15 Replies)
I am having problems getting a list of filenames that I want from a directory.
example: I have 3 files - filename.xxx.20110505.123030
filename.yyy.20110505.123030
filename.zzz.20110505.123030
There may be multiple xxx,... (3 Replies)
This seems like an easy question, but I can't find an answer already posted.
I want a command to return all of the lines in a file containing exactly a string
I tried
grep -x "372701" x.txt
but this did not return anything
I am just trying to search a file for lines which contain... (4 Replies)
Discussion started by: jgrosecl
4 Replies
LEARN ABOUT DEBIAN
bio::seqio::kegg
Bio::SeqIO::kegg(3pm) User Contributed Perl Documentation Bio::SeqIO::kegg(3pm)NAME
Bio::SeqIO::kegg - KEGG sequence input/output stream
SYNOPSIS
# It is probably best not to use this object directly, but
# rather go through the SeqIO handler system. Go:
use Bio::SeqIO;
$stream = Bio::SeqIO->new(-file => $filename, -format => 'KEGG');
while ( my $seq = $stream->next_seq() ) {
# do something with $seq
}
DESCRIPTION
This class transforms KEGG gene records into Bio::Seq objects.
Mapping of record properties to object properties
This section is supposed to document which sections and properties of a KEGG databank record end up where in the Bioperl object model. It
is far from complete and presently focuses only on those mappings which may be non-obvious. $seq in the text refers to the
Bio::Seq::RichSeqI implementing object returned by the parser for each record.
'ENTRY'
$seq->primary_id
'NAME'
$seq->display_id
'DEFINITION'
$seq->annotation->get_Annotations('description');
'ORTHOLOG'
grep {$_->database eq 'KO'} $seq->annotation->get_Annotations('dblink')
'CLASS'
grep {$_->database eq 'PATH'}
$seq->annotation->get_Annotations('dblink')
'POSITION'
FIXME, NOT IMPLEMENTED
'PATHWAY'
for my $pathway ( $seq->annotation->get_Annotations('pathway') ) {
#
}
'DBLINKS'
$seq->annotation->get_Annotations('dblink')
'CODON_USAGE'
FIXME, NOT IMPLEMENTED
'AASEQ'
$seq->translate->seq
'NTSEQ'
$seq-E<gt>seq
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
next_seq
Title : next_seq
Usage : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq::RichSeq object
Args :
write_seq
Title : write_seq
Note : write_seq() is not implemented for KEGG format output.
perl v5.14.2 2012-03-02 Bio::SeqIO::kegg(3pm)