I have a fasta file like this one:
And I am using this sed script to increase the count sequence
I get the desired output:
However, this doesn't work and I do not understand why:
I was hoping someone here would help me understand the issue. Moreover, I was hoping I could get a better, more elegant sed solution. While perl or awk might be more appropriate, I am actually looking for 100% sed approach.
Thanks in advance
Hi forum. I am fairly new to scripting and use a simple script to process e-mails for my work. These e-mails contain a list of IPv4 IPs that I process and seperate into text files, which are then attached to a larger, 'digest' e-mail. I also put some of the output from the text files into the... (4 Replies)
Hi,
I have a script which removes 2 header records and 1 trailer record in a list of files. The commands doing the actions are
sed '1,2d' $file > tempfile1.dat
sed '$d' < tempfile1.dat > $output.txt
Its working fine for all records except a file having size=1445509814 and number of... (2 Replies)
hi forums
i need help with a little problem i am having.
i need to count the number of fields that are in a saved variable so i can use that number to make a different function work properly.
is there a way of doing this without using SED/AWK?
anything would be greatly appreciated (4 Replies)
I'm using sed to do find and replace. But since the file is huge and i have more than 1000 files to be searched, the script is taking a lot of time. Can somebody help me with a better sed command. Below is the details.
Input:
1
1
2
3
3
4
5
5
Here I know the file is sorted.
... (4 Replies)
Hi
I am having a 'grep' headache
Here is the contents of my file:
(PBZ,CP,(((ME,PBZ,BtM),ON),((ME,((PBZ,DG),(CW9,PG11))),CW9,TS2,RT1)))
I would like to count out how many times 'PBZ' occurs and then place that number in the line above
3... (8 Replies)
I currently use LaTeX together with a sed script to set cloze test papers for my students. I currently pepend and equals sign to the front of the words I want to leave out in the finished test, =perpendicular, for example. I am able to number the blanks using a variable in LaTeX. I would like to... (8 Replies)
Hi ,
How can i get count of replacements done by sed in a file.
I know grep -c is a method.
But say if sed had made 10 replacement in a file, can i get number 10 some how? (8 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Friends,
In the file i am having more then 100 lines like,
File1 had the values like this:
#Example East.server_01=EAST.SERVER_01
East.server_01=EAST.SERVER_01
West.server_01=WEST.SERVER_01
File2 had the values like this:
#Example EAST.SERVER_01=http://yahoo.com... (3 Replies)
Hello,
I have 10 fasta files with sequenced reads information with read sizes from 15 - 35 . I have combined the reads and collapsed in to unique reads and filtered for sizes 18 - 26 bp long unique reads. Now i wanted to count each unique read appearance in all the fasta files and make a table... (5 Replies)
Discussion started by: empyrean
5 Replies
LEARN ABOUT MOJAVE
locale::codes::langvar
Locale::Codes::LangVar(3pm) Perl Programmers Reference Guide Locale::Codes::LangVar(3pm)NAME
Locale::Codes::LangVar - standard codes for language variation identification
SYNOPSIS
use Locale::Codes::LangVar;
$lvar = code2langvar('acm'); # $lvar gets 'Mesopotamian Arabic'
$code = langvar2code('Mesopotamian Arabic'); # $code gets 'acm'
@codes = all_langvar_codes();
@names = all_langvar_names();
DESCRIPTION
The "Locale::Codes::LangVar" module provides access to standard codes used for identifying language variations, such as those as defined in
the IANA language registry.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
registry codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language variations. A code set may be specified using either a name, or
a constant that is automatically exported by this module.
For example, the two are equivalent:
$lvar = code2langvar('en','alpha-2');
$lvar = code2langvar('en',LOCALE_CODE_ALPHA_2);
The codesets currently supported are:
alpha
This is the set of alphanumeric codes from the IANA language registry, such as 'arevela' for Eastern Armenian.
This code set is identified with the symbol "LOCALE_LANGVAR_ALPHA".
This is the default code set.
ROUTINES
code2langvar ( CODE [,CODESET] )
langvar2code ( NAME [,CODESET] )
langvar_code2code ( CODE ,CODESET ,CODESET2 )
all_langvar_codes ( [CODESET] )
all_langvar_names ( [CODESET] )
Locale::Codes::LangVar::rename_langvar ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangVar::add_langvar ( CODE ,NAME [,CODESET] )
Locale::Codes::LangVar::delete_langvar ( CODE [,CODESET] )
Locale::Codes::LangVar::add_langvar_alias ( NAME ,NEW_NAME )
Locale::Codes::LangVar::delete_langvar_alias ( NAME )
Locale::Codes::LangVar::rename_langvar_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangVar::add_langvar_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangVar::delete_langvar_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.iana.org/assignments/language-subtag-registry
The IANA language subtag registry.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.18.2 2014-01-06 Locale::Codes::LangVar(3pm)