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Shell Programming and Scripting
awk Matching Columns - Am I missing something?
Post 303024171 by dis0wned on Tuesday 2nd of October 2018 09:24:35 AM
10-02-2018
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1. Shell Programming and Scripting
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
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2. Shell Programming and Scripting
Hi,
I wish to use a column, as inputted by a user from command line, for pattern matching.
awk file:
{
if($1 ~ /^8/)
{
print $0> "temp2.csv"
}
}
something like this, but i want '$1' to be any column as selected by the user from command line.
... (1 Reply)
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Input_ File :
2 3 4 5
1 1 0 1
2 1 -1 1
2 1 3 1
3 1 4 1
6 5 6 6
6 6 6 7
6 7 6 8
5 8 6 7
Desired output :
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-1 1 4 1
6 5 6 8
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Hello,
I have two files as following:
#bin chrom chromStart chromEnd name score strand observed
585 chr2 29442 29443 rs4637157 0 + C/T
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Hello Help,
2356798 7689867 999 000
123678 20385907 9797 666
17978975 87468976 968978 98798
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input:
chr1 1 2 3
chr1 1 2 4
chr1 2 4 5
chr2 3 6 9
chr2 3 6 10
Code:
awk '{a+=$4}END{for (i in a) print i,a}' input
Output:
chr112 7
chr236 19
chr124 5
Desired output:
chr1 1 2 7
chr2 3 6 19
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Given this file (I separated them in block to make my explanation clearer):
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I know I'm not the first one asking this but my code still does not work:
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LEARN ABOUT PLAN9
join
JOIN(1) General Commands Manual JOIN(1) NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If one of the file names is the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Input fields are normally separated spaces or tabs; output fields by space. In this case, multiple separators count as one, and leading separators are discarded. The following options are recognized, with POSIX syntax. -a n In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -v n Like -a, omitting output for paired lines. -e s Replace empty output fields by string s. -1 m -2 m Join on the mth field of file1 or file2. -jn m Archaic equivalent for -n m. -ofields Each output line comprises the designated fields. The comma-separated field designators are either 0, meaning the join field, or have the form n.m, where n is a file number and m is a field number. Archaic usage allows separate arguments for field designators. -tc Use character c as the only separator (tab character) on input and output. Every appearance of c in a line is significant. EXAMPLES
sort /adm/users | join -t: -a 1 -e "" - bdays Add birthdays to password information, leaving unknown birthdays empty. The layout of is given in users(6); bdays contains sorted lines like tr : ' ' </adm/users | sort -k 3 3 >temp join -1 3 -2 3 -o 1.1,2.1 temp temp | awk '$1 < $2' Print all pairs of users with identical userids. SOURCE
/sys/src/cmd/join.c SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b -ky,y; with -t, the sequence is that of sort -tx -ky,y. One of the files must be randomly accessible. JOIN(1)