10-02-2018
From the data in the file samples posted none of the values in file2 field 1 match file1 field 2.
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1. Shell Programming and Scripting
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
Discussion started by: floripoint
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2. Shell Programming and Scripting
Hi,
I wish to use a column, as inputted by a user from command line, for pattern matching.
awk file:
{
if($1 ~ /^8/)
{
print $0> "temp2.csv"
}
}
something like this, but i want '$1' to be any column as selected by the user from command line.
... (1 Reply)
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3. Shell Programming and Scripting
I am trying to match 4 colums (first_name,last_name,dob,ssn) between 2 files and when there is an exact match I need to write out these matches to a new file with a combination of fields from file1 and file2. I've managed to come up with a way to match these 2 files based on the columns (see below)... (7 Replies)
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4. Shell Programming and Scripting
Input_ File :
2 3 4 5
1 1 0 1
2 1 -1 1
2 1 3 1
3 1 4 1
6 5 6 6
6 6 6 7
6 7 6 8
5 8 6 7
Desired output :
2 3 4 5
-1 1 4 1
6 5 6 8
5 8 6 7 (3 Replies)
Discussion started by: vasanth.vadalur
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5. Shell Programming and Scripting
Hello,
I have two files as following:
#bin chrom chromStart chromEnd name score strand observed
585 chr2 29442 29443 rs4637157 0 + C/T
585 chr2 33011 33012 rs13423995 0 + A/G
585 chr2 34502 34503 rs13386087 0 + ... (2 Replies)
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6. Shell Programming and Scripting
Hello Help,
2356798 7689867 999 000
123678 20385907 9797 666
17978975 87468976 968978 98798
I am trying to have out put which actually look for the third column value of 9797 and then it insert line there after with first, second column value exactly as the previous line and replace the third... (3 Replies)
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7. Shell Programming and Scripting
input:
chr1 1 2 3
chr1 1 2 4
chr1 2 4 5
chr2 3 6 9
chr2 3 6 10
Code:
awk '{a+=$4}END{for (i in a) print i,a}' input
Output:
chr112 7
chr236 19
chr124 5
Desired output:
chr1 1 2 7
chr2 3 6 19
chr1 2 4 5 (1 Reply)
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8. Shell Programming and Scripting
Given this file (I separated them in block to make my explanation clearer):
92157768877;Sof_deme_Fort_Email_am_%yyyy%%mm%%dd%;EMAIL;20/02/2015;1;0;0
92157768877;Sof_trav_Fort_Email_am_%yyyy%%mm%%dd%;EMAIL;20/02/2015;1;0;0
91231838895;Sof_deme_faible_Email_am;EMAIL;26/01/2015;1 0;0... (1 Reply)
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9. Shell Programming and Scripting
Hello all,
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10. Shell Programming and Scripting
I know I'm not the first one asking this but my code still does not work:
File 1: gi|1283| tRNAscan exon 87020 88058 . - . transcript_id "Parent=tRNA-Tyr5.r01";
gi|3283| tRNAscan exon 97020 97058 . + . transcript_id "Parent=tRNA-Tyr6.r01";
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JOIN(1) General Commands Manual JOIN(1)
NAME
join - relational database operator
SYNOPSIS
join [-an] [-e s] [-o list] [-tc] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard
input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis-
carded.
These options are recognized:
-an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-e s Replace empty output fields by string s.
-o list
Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a
field number.
-tc Use character c as a separator (tab character). Every appearance of c in a line is significant.
SEE ALSO
sort(1), comm(1), awk(1).
BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort.
The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous.
7th Edition April 29, 1985 JOIN(1)