Looking into the data there are a couple of modifications that I am unsure how to incorporate. The streches are detected and the loop is amazing and very helpful. The math is slightly different and the repeat stretch is opposite, hopefully the examples will help to show but if strand=- then the bases in blue (rightmost) are the start or first number after the : and the repeats in green are opposite:
Thank you very much .
input
desired output
In the line with > if the strand=+ then everything is good except that the calculated range=chr2:166170446-166170451 is 1 digit off. An example is
is
In the line with > if the strand=- then the math is slightly different in that the first # is really the end position. An example is,
is
If Nothing Detected then the line is as is. Thank you again .
Last edited by cmccabe; 08-21-2018 at 05:05 PM..
Reason: added details
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