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Full Discussion: Use awk to replace numbers in a file with a column from another file
Top Forums Shell Programming and Scripting Use awk to replace numbers in a file with a column from another file Post 303019774 by nastaziales on Friday 6th of July 2018 04:41:13 AM
Old 07-06-2018
I'm sorry, I will try to explain it better,


file n.1


Code:

1   1   88                        c(1:5, 7, 9) 

2   2  128 c(39:41, 43:101, 103:105, 153, 155:189, 292, 344:369) 

3   3   84                     c(190:249, 603, 606:607, 609:629) 

4   4   12                                   c(250:251, 253:262)

 5   6   51                     c(263, 265:291, 293:313, 315:316)
 6   8   28                                       c(314, 317:343)

where 1:5, 7, 9 is the atomic number,

file n.2


Code:
 ATOM      1  N   PRO   889      24.289  17.277 -19.912  1.00  0.00           N  

 ATOM      2  CA  PRO   889      25.072  18.509 -19.702  1.00  0.00           C   

ATOM      3   C   PRO   889      24.200  19.747 -19.486  1.00  0.00           C  

ATOM      4   O   PRO   889      24.602  20.661 -18.749  1.00  0.00           O  

 ATOM      5   N   THR   890      23.002  19.770 -20.124  1.00  0.00           N   

ATOM      6  CA  THR   890      22.044  20.878 -20.060  1.00  0.00           C  

 ATOM      7  C   THR   890      21.613  21.209 -18.629  1.00  0.00           C   

ATOM       8  O   THR   890      21.429  20.303 -17.812  1.00  0.00           O   

ATOM      9   N   VAL   891      21.484  22.513 -18.332  1.00  0.00           N

the second column is also the atomic number (blue), the fifth column is the residue number(red),
so i want the atomic number in file 1 to be replaced with the residue number taken from file 2. So as an output

before
1 1 88 c(1:5, 7, 9)

After
1 1 88 c(889:890, 890, 891)
Last edited by nastaziales; 07-06-2018 at 05:59 AM..
 

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