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Full Discussion: Compare and replace two columns from two files
Top Forums Shell Programming and Scripting Compare and replace two columns from two files Post 303019678 by Chubler_XL on Tuesday 3rd of July 2018 10:42:21 PM
Old 07-03-2018
Here is my attempt, I've only replace fields that start with two or more ., characters as you seem to have fields ending with these characters in your desired output:

Code:
awk '
FNR==1 {
   if (NR>1) print
   next
}
{ key = $1 FS $2 }
FNR==NR{
    hgvs_c[key]=$6
    hgvs_p[key]=$7
    next
}
key in hgvs_c {
   $7 = hgvs_c[key]
   $8 = hgvs_p[key]
}
{ gsub(/\t[\.,]{2,}[^\t]*/, "\t-") }
1' FS='\t' OFS='\t' file2 file1

This User Gave Thanks to Chubler_XL For This Post:
nans
 

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LEARN ABOUT NETBSD

kstash

KSTASH(8)						    BSD System Manager's Manual 						 KSTASH(8)

NAME

     kstash -- store the KDC master password in a file

SYNOPSIS

     kstash [-e string | --enctype=string] [-k file | --key-file=file] [--convert-file] [--random-key] [--master-key-fd=fd] [--random-key]
	    [-h | --help] [--version]

DESCRIPTION

     kstash reads the Kerberos master key and stores it in a file that will be used by the KDC.

     Supported options:

     -e string, --enctype=string
	     the encryption type to use, defaults to DES3-CBC-SHA1.

     -k file, --key-file=file
	     the name of the master key file.

     --convert-file
	     don't ask for a new master key, just read an old master key file, and write it back in the new keyfile format.

     --random-key
	     generate a random master key.

     --master-key-fd=fd
	     filedescriptor to read passphrase from, if not specified the passphrase will be read from the terminal.

FILES

     /var/heimdal/m-key is the default keyfile if no other keyfile is specified.  The format of a Heimdal master key is the same as a keytab, so
     ktutil list can be used to list the content of the file.

SEE ALSO

     kdc(8)

BSD
								  April 10, 2007							       BSD
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