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Top Forums Shell Programming and Scripting Compare and replace two columns from two files Post 303019678 by Chubler_XL on Tuesday 3rd of July 2018 10:42:21 PM
Old 07-03-2018
Here is my attempt, I've only replace fields that start with two or more ., characters as you seem to have fields ending with these characters in your desired output:

Code:
awk '
FNR==1 {
   if (NR>1) print
   next
}
{ key = $1 FS $2 }
FNR==NR{
    hgvs_c[key]=$6
    hgvs_p[key]=$7
    next
}
key in hgvs_c {
   $7 = hgvs_c[key]
   $8 = hgvs_p[key]
}
{ gsub(/\t[\.,]{2,}[^\t]*/, "\t-") }
1' FS='\t' OFS='\t' file2 file1

This User Gave Thanks to Chubler_XL For This Post:
 

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MAKEKEY(8)						      System Manager's Manual							MAKEKEY(8)

NAME
makekey - generate encryption key SYNOPSIS
/usr/lib/makekey DESCRIPTION
Makekey improves the usefulness of encryption schemes depending on a key by increasing the amount of time required to search the key space. It reads 10 bytes from its standard input, and writes 13 bytes on its standard output. The output depends on the input in a way intended to be difficult to compute (i.e. to require a substantial fraction of a second). The first eight input bytes (the input key) can be arbitrary ASCII characters. The last two (the salt) are best chosen from the set of digits, upper- and lower-case letters, and `.' and `/'. The salt characters are repeated as the first two characters of the output. The remaining 11 output characters are chosen from the same set as the salt and constitute the output key. The transformation performed is essentially the following: the salt is used to select one of 4096 cryptographic machines all based on the National Bureau of Standards DES algorithm, but modified in 4096 different ways. Using the input key as key, a constant string is fed into the machine and recirculated a number of times. The 64 bits that come out are distributed into the 66 useful key bits in the result. Makekey is intended for programs that perform encryption (e.g. ed and crypt(1)). Usually its input and output will be pipes. SEE ALSO
crypt(1), ed(1) MAKEKEY(8)
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